Co-expression analysis

Gene ID	Zm.14073.1.S1_s_at
Gene name	60S ribosomal protein L28
Homology with Arabidopsis	Similar to At2g19730: 60S ribosomal protein L28 (RPL28A) (HF=8e-9)
Module size	12 genes
NF	0.54
%ile	71.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	94.3	0.98	Zm.14073.1.S1_s_at	CD995440	60S ribosomal protein L28	-	8e-9	At2g19730	60S ribosomal protein L28 (RPL28A)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.99	ZmAffx.932.1.S1_at	AI795506	-	-	3e+0	At5g22430	unknown protein	O.I.	H.G.	S.X.	Please select
0.64	81.7	0.99	Zm.13194.2.A1_at	AY108895.1	Hypothetical protein LOC100191145	-	5e-3	At4g36500	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.99	Zm.7056.4.A1_at	CD434927	-	-	8e-26	At2g06990	HEN2 (hua enhancer 2)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.99	Zm.12535.1.S1_at	AY105384.1	hypothetical protein LOC100278440	-	9e+0	At5g01390	DNAJ heat shock protein, putative	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.98	Zm.19191.1.A1_at	AY106439.1	-	-	5e-1	At3g46510	PUB13 (PLANT U-BOX 13)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.99	ZmAffx.734.1.A1_at	AI740044	-	-	1e+1	At5g01670	aldose reductase, putative	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.99	Zm.14107.2.A1_at	AI770963	-	-	8e-1	At3g56880	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.99	ZmAffx.71.1.S1_at	AI665169	-	-	3e+0	At1g50640	ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.99	Zm.13162.1.A1_at	CO521967	-	-	9e-3	At3g02040	SRG3 (senescence-related gene 3)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.99	Zm.17775.1.S1_at	CF627602	50S ribosomal protein L12-2	-	5e+0	At4g14358	-	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.99	ZmAffx.566.1.A1_at	AI714636	-	-	2e-1	At5g05610	AL1 (ALFIN-LIKE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.7	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.0	90.2	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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