Co-expression analysis

Gene ID Zm.14052.1.A1_at
Gene name hypothetical protein LOC100272508
Homology with ArabidopsisSimilar to At2g22400: NOL1/NOP2/sun family protein (HF=3e-17)
Module size 7 genes
NF 0.66
%ile 88.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.97Zm.14052.1.A1_atCF036019hypothetical protein LOC100272508-3e-17At2g22400NOL1/NOP2/sun family proteinO.I.H.G.S.X.
0.6381.10.97Zm.10865.1.A1_atCF638037hypothetical protein LOC100275271-1e-6At2g44090-O.I.H.G.S.X.
0.6381.10.97Zm.4618.1.A1_atAW066311pre-mRNA-splicing factor ISY1-4e-7At3g18790-O.I.H.G.S.X.
0.6179.50.97Zm.1047.1.S1_atCB381142hypothetical protein LOC100277178-1e+0At1g10865-O.I.H.G.S.X.
0.6077.80.97Zm.264.2.A1_x_atCF012670acetyl-coenzyme A carboxylase-8e+0At5g02890transferase family proteinO.I.H.G.S.X.
0.5775.10.97Zm.24.2.S1_atAJ001635.1viviparous1-3e+0At2g40765unknown proteinO.I.H.G.S.X.
0.5571.60.97Zm.3611.1.S1_atCA403298choline-phosphate cytidylyltransferase B-2e-22At4g15130catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferaseO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.698.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.996.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.296.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.195.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.492.2GSM162264Mutant 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.8993.3.S1_at, orthologous to the query gene, Zm.14052.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8894.4Ta.8993.3.S1_atAt2g22400--1e+0At1g07050CONSTANS-like protein-relatedO.I.H.G.S.X.
0.4159.6TaAffx.31676.1.S1_atAt2g22400RING-H2 finger protein-3e-1At3g52350D111/G-patch domain-containing proteinO.I.H.G.S.X.
0.3346.9Ta.1238.3.S1_a_atAt2g22400--3e-1At1g25472CPuORF54 (Conserved peptide upstream open reading frame 54)O.I.H.G.S.X.
0.2735.6TaAffx.30782.1.S1_atAt2g22400--2e+1At5g55200co-chaperone grpE protein, putativeO.I.H.G.S.X.
0.2329.0TaAffx.11110.1.S1_x_atAt2g22400--4e+0At4g29650cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolaseO.I.H.G.S.X.
0.2329.0TaAffx.91764.1.S1_atAt2g22400--1e+0At5g55570unknown proteinO.I.H.G.S.X.
0.2329.0TaAffx.702.2.S1_x_atAt2g22400--6e-1At4g32915-O.I.H.G.S.X.
0.2125.5Ta.2835.3.A1_x_atAt2g22400--1e+0At1g04635EMB1687 (EMBRYO DEFECTIVE 1687)O.I.H.G.S.X.
0.2024.0TaAffx.8331.1.S1_atAt2g22400--3e-4At1g06020pfkB-type carbohydrate kinase family proteinO.I.H.G.S.X.
0.1821.0TaAffx.128418.72.S1_atAt2g22400--2e+1At5g28620protein kinase C-relatedO.I.H.G.S.X.
0.1618.2Ta.7714.3.S1_x_atAt2g22400--1e+0At1g16700NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putativeO.I.H.G.S.X.
0.1618.2TaAffx.84292.1.S1_atAt2g22400--2e+0At4g05070unknown proteinO.I.H.G.S.X.
0.1517.1Ta.5357.2.S1_x_atAt2g22400--1e-3At4g39235unknown proteinO.I.H.G.S.X.
0.067.6Ta.30799.3.S1_a_atAt2g22400--6e-2At5g54580RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.056.7Ta.25400.1.A1_atAt2g22400--1e-1At1g62060unknown proteinO.I.H.G.S.X.
0.034.7Ta.26920.2.A1_x_atAt2g22400--2e+0At3g13610oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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