Co-expression analysis

Gene ID Zm.14039.3.S1_a_at
Gene name plasminogen activator inhibitor 1 RNA-binding protein
Homology with ArabidopsisSimilar to At4g16830: nuclear RNA-binding protein (RGGA) (HF=2e-3)
Module size 11 genes
NF 0.42
%ile 48.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5875.10.95Zm.14039.3.S1_a_atAF113521.1plasminogen activator inhibitor 1 RNA-binding protein-2e-3At4g16830nuclear RNA-binding protein (RGGA)O.I.H.G.S.X.
0.6077.80.96Zm.869.2.S1_atAI711751Hypothetical protein LOC100192365-6e+0At5g15560unknown proteinO.I.H.G.S.X.
0.5369.10.97Zm.16049.2.A1_atCF042888--3e-4At5g0385040S ribosomal protein S28 (RPS28B)O.I.H.G.S.X.
0.5065.70.96ZmAffx.754.1.A1_atAI745921--2e-1At1g33960AIG1 (AVRRPT2-INDUCED GENE 1)O.I.H.G.S.X.
0.4861.30.95Zm.9839.1.A1_atBM339393Hypothetical protein LOC100193033-3e+0At2g17300unknown proteinO.I.H.G.S.X.
0.4048.50.96Zm.12150.1.S1_atAY106576.160S ribosomal protein L30-7e-15At1g3624060S ribosomal protein L30 (RPL30A)O.I.H.G.S.X.
0.4048.50.97Zm.8301.1.A1_atBM379812hypothetical protein LOC100278224-1e+0At4g21780unknown proteinO.I.H.G.S.X.
0.3538.90.95Zm.811.1.A1_atCA405132cathepsin B-like cysteine proteinase 3-2e-23At1g02305cathepsin B-like cysteine protease, putativeO.I.H.G.S.X.
0.3131.60.96Zm.7976.1.S1_atBM080696hypothetical protein LOC100217261-2e-46At5g37680ATARLA1A (ADP-ribosylation factor-like A1A)O.I.H.G.S.X.
0.3029.80.96Zm.16315.1.S1_a_atAF326488.1plasma membrane integral protein ZmPIP1-3-3e-24At3g61430PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A)O.I.H.G.S.X.
0.2928.10.96Zm.4887.1.S1_atAY108295.1hypothetical protein LOC100192109-6e-5At3g51860CAX3 (CATION EXCHANGER 3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.499.0GSM162264Mutant 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
13.698.8GSM162266Wild type 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
12.298.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.598.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.298.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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