Co-expression analysis

Gene ID	Zm.14036.1.S1_at
Gene name	embryo specific protein1
Homology with Arabidopsis	Similar to At2g40170: GEA6 (LATE EMBRYOGENESIS ABUNDANT 6) (HF=3e-2)
Module size	6 genes
NF	0.56
%ile	73.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.95	Zm.14036.1.S1_at	X55388.1	embryo specific protein1	-	3e-2	At2g40170	GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.95	ZmAffx.1.1.S1_s_at	AY722707.1	hypothetical LOC542518	-	5e-51	At1g57870	ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	Zm.12387.1.S1_at	AW000286	-	-	2e+1	Atmg01300	-	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.95	Zm.7080.3.A1_at	BM382181	hypothetical protein LOC100192855	-	2e-18	At1g09690	60S ribosomal protein L21 (RPL21C)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.95	Zm.5451.1.S1_at	AI621979	-	-	8e-4	At4g36970	remorin family protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.95	Zm.13494.1.A1_at	AY108782.1	-	-	4e-1	At2g17300	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.0	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

A co-expression module including the grape gene, 1620890_at, orthologous to the query gene, Zm.14036.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	1620890_at	At2g40170	hypothetical protein LOC100263962	-	2e-1	At2g40170	GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)	O.I.	H.G.	S.X.	Please select
0.85	94.9	1616498_at	At2g40170	hypothetical protein LOC100263757	-	1e-13	At4g16160	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	O.I.	H.G.	S.X.	Please select
0.84	94.8	1611384_at	At2g40170	hypothetical protein LOC100244040	-	3e+0	At3g51020	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	94.6	1615698_at	At2g40170	-	-	3e+0	At1g17350	auxin-induced-related / indole-3-acetic acid induced-related	O.I.	H.G.	S.X.	Please select
0.81	93.7	1613370_at	At2g40170	hypothetical protein LOC100246418	-	5e-4	At1g29680	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	93.6	1609261_s_at	At2g40170	hypothetical protein LOC100264228	-	4e+0	At2g26020	PDF1.2b (plant defensin 1.2b)	O.I.	H.G.	S.X.	Please select
0.74	91.0	1609832_at	At2g40170	hypothetical protein LOC100267534	-	2e-8	At2g42000	plant EC metallothionein-like family 15 protein	O.I.	H.G.	S.X.	Please select
0.74	91.0	1617579_at	At2g40170	hypothetical protein LOC100252810	-	3e-1	At1g09760	U2A' (U2 small nuclear ribonucleoprotein A)	O.I.	H.G.	S.X.	Please select
0.74	91.0	1621786_at	At2g40170	hypothetical protein LOC100249921	-	2e-3	At5g67490	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	90.8	1608715_at	At2g40170	hypothetical protein LOC100258268	-	4e+0	At5g10280	ATMYB92 (MYB DOMAIN PROTEIN 92)	O.I.	H.G.	S.X.	Please select
0.72	89.7	1618959_at	At2g40170	hypothetical protein LOC100247141	-	9e-1	At5g20020	RAN2	O.I.	H.G.	S.X.	Please select
0.72	89.7	1621232_at	At2g40170	hypothetical protein LOC100249843	-	1e-7	At1g05510	-	O.I.	H.G.	S.X.	Please select
0.70	88.6	1613191_at	At2g40170	hypothetical protein LOC100254511	-	8e-2	At3g20850	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.70	88.6	1616868_at	At2g40170	hypothetical protein LOC100256467	-	3e-1	At3g52910	AtGRF4 (GROWTH-REGULATING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.68	88.0	1613454_at	At2g40170	hypothetical protein LOC100264991	-	1e+0	At5g59860	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.68	88.0	1613815_at	At2g40170	hypothetical protein LOC100259564	-	2e-3	At1g48130	ATPER1	O.I.	H.G.	S.X.	Please select
0.68	88.0	1619481_at	At2g40170	hypothetical protein LOC100256947	-	2e-2	At4g25140	OLEO1 (OLEOSIN 1)	O.I.	H.G.	S.X.	Please select
0.68	88.0	1614568_at	At2g40170	-	-	3e-1	At5g19190	unknown protein	O.I.	H.G.	S.X.	Please select
0.66	85.1	1619180_at	At2g40170	hypothetical protein LOC100252897	-	2e-14	At1g17810	BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN)	O.I.	H.G.	S.X.	Please select
0.66	85.1	1607519_at	At2g40170	hypothetical protein LOC100263055	-	1e-2	At2g36640	ATECP63 (EMBRYONIC CELL PROTEIN 63)	O.I.	H.G.	S.X.	Please select
0.66	85.1	1611931_at	At2g40170	hypothetical protein LOC100254405	-	1e+0	At1g04260	MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7)	O.I.	H.G.	S.X.	Please select
0.65	85.0	1620307_at	At2g40170	hypothetical protein LOC100264814	-	2e-10	At2g33380	RD20 (RESPONSIVE TO DESSICATION 20)	O.I.	H.G.	S.X.	Please select
0.65	85.0	1611316_at	At2g40170	hypothetical protein LOC100266502	-	1e-1	At3g22500	ATECP31	O.I.	H.G.	S.X.	Please select
0.65	85.0	1609355_at	At2g40170	hypothetical protein LOC100255606	-	2e-6	At2g21490	LEA (DEHYDRIN LEA)	O.I.	H.G.	S.X.	Please select
0.65	85.0	1620956_at	At2g40170	hypothetical protein LOC100264933	-	1e+0	At3g46230	ATHSP17.4	O.I.	H.G.	S.X.	Please select
0.64	84.7	1611173_at	At2g40170	hypothetical protein LOC100258969	-	1e+0	At3g25080	unknown protein	O.I.	H.G.	S.X.	Please select
0.64	84.7	1622865_at	At2g40170	-	-	2e-2	At1g80090	CBS domain-containing protein	O.I.	H.G.	S.X.	Please select
0.62	83.3	1615158_at	At2g40170	hypothetical protein LOC100243960	-	5e+0	At5g35120	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	1614771_at	At2g40170	hypothetical protein LOC100242179	-	1e+0	At5g62200	embryo-specific protein-related	O.I.	H.G.	S.X.	Please select
0.61	83.2	1611085_at	At2g40170	hypothetical protein LOC100241544	-	9e-2	At1g60060	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	1615612_at	At2g40170	similar to cytosolic class II small heat-shock protein HSP17.5	-	2e-2	At3g03490	PEX19-1 (peroxin 19-1)	O.I.	H.G.	S.X.	Please select
0.60	81.9	1610616_at	At2g40170	hypothetical protein LOC100260773 /// hypothetical protein LOC100252365	-	5e-3	At1g62710	BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)	O.I.	H.G.	S.X.	Please select
0.59	80.6	1617704_at	At2g40170	hypothetical protein LOC100268006	-	1e-7	At2g23610	MES3 (METHYL ESTERASE 3)	O.I.	H.G.	S.X.	Please select
0.58	79.8	1614697_at	At2g40170	hypothetical protein LOC100255962	-	5e+0	At5g07550	GRP19 (GLYCINE-RICH PROTEIN 19)	O.I.	H.G.	S.X.	Please select
0.56	79.4	1621395_at	At2g40170	hypothetical protein LOC100243587 /// hypothetical protein LOC100251575	-	6e-7	At1g78380	ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19)	O.I.	H.G.	S.X.	Please select
0.56	79.4	1621723_at	At2g40170	hypothetical protein LOC100248744	-	6e-14	At1g61110	anac025 (Arabidopsis NAC domain containing protein 25)	O.I.	H.G.	S.X.	Please select
0.56	79.4	1613161_at	At2g40170	hypothetical protein LOC100257921	-	3e+0	At4g18860	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	1616836_at	At2g40170	hypothetical protein LOC100260276	-	4e+0	At1g35440	CYCT1	O.I.	H.G.	S.X.	Please select
0.55	77.3	1619031_at	At2g40170	hypothetical protein LOC100266074	-	5e-10	At3g63140	CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA)	O.I.	H.G.	S.X.	Please select
0.54	75.7	1620137_s_at	At2g40170	hypothetical protein LOC100260466	-	3e+0	At3g20510	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	64.6	1606513_s_at	At2g40170	similar to Stress-related protein	-	2e+0	At2g47780	rubber elongation factor (REF) protein-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Back to the CoP portal site

Back to the KAGIANA project homepage