Co-expression analysis

Gene ID Zm.1402.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g29040: unknown protein (HF=4e+0)
Module size 6 genes
NF 0.59
%ile 78.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.96Zm.1402.1.S1_atBF729248--4e+0At1g29040unknown proteinO.I.H.G.S.X.
0.9199.00.96Zm.4338.3.S1_atAW000126--3e+0At5g27170unknown proteinO.I.H.G.S.X.
0.8094.00.96Zm.4350.1.A1_atAW091239--1e+0At5g49334unknown proteinO.I.H.G.S.X.
0.7389.90.96Zm.13325.1.S1_atBQ279643--3e+0At4g271402S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1O.I.H.G.S.X.
0.3742.30.96Zm.13484.1.S1_atAY108906.1--3e-1At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)O.I.H.G.S.X.
0.3233.40.96Zm.3875.1.S1_atBQ539306--2e-31At1g50200ALATS (ALANYL-TRNA SYNTHETASE)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.298.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.597.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.090.2GSM202314Mo17 19 day after pollination embryo tissue, biological replicate 2GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.C954000001_at, orthologous to the query gene, Zm.1402.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6181.8PsAffx.C954000001_atAt1g29040--1e+0At2g44520COX10 (cytochrome c oxidase 10)O.I.H.G.S.X.
0.7388.9PsAffx.C115000050_s_atAt1g29040--2e+0At5g66490unknown proteinO.I.H.G.S.X.
0.7288.1PsAffx.C70000046_atAt1g29040--3e+0At4g19100unknown proteinO.I.H.G.S.X.
0.7187.8HgAffx.19610.1.S1_atAt1g29040--4e+0At5g23460unknown proteinO.I.H.G.S.X.
0.7087.1PsAffx.psZS004xD23f_atAt1g29040--4e+0At1g29420-O.I.H.G.S.X.
0.6986.8PsAffx.C1000175_atAt1g29040--5e+0At5g23290PDF5 (PREFOLDIN 5)O.I.H.G.S.X.
0.6886.4GmaAffx.55284.1.S1_atAt1g29040--3e+0At5g10390histone H3O.I.H.G.S.X.
0.6886.4PsAffx.C68000072_atAt1g29040--4e+0At2g41410calmodulin, putativeO.I.H.G.S.X.
0.6786.1HgAffx.3013.1.S1_atAt1g29040--3e-1At1g66890-O.I.H.G.S.X.
0.6786.1PsAffx.C63000067_atAt1g29040--1e-1At5g05150AtATG18eO.I.H.G.S.X.
0.6786.1PsAffx.C177000015_atAt1g29040--2e-1At4g25150acid phosphatase, putativeO.I.H.G.S.X.
0.6786.1PsAffx.C154000024_atAt1g29040--2e-1At5g62160AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)O.I.H.G.S.X.
0.6786.1HgAffx.11003.1.S1_atAt1g29040--4e+0At3g28630-O.I.H.G.S.X.
0.6786.1HgAffx.5776.1.S1_atAt1g29040--1e+0At5g59030COPT1 (copper transporter 1)O.I.H.G.S.X.
0.6583.8PsAffx.C137000034_s_atAt1g29040--2e-1At3g44110ATJ3O.I.H.G.S.X.
0.6583.8PsAffx.C85000047_atAt1g29040--1e-1At3g21860ASK10 (ARABIDOPSIS SKP1-LIKE 10)O.I.H.G.S.X.
0.6483.4HgAffx.24315.1.S1_atAt1g29040--9e-1At4g15930microtubule motorO.I.H.G.S.X.
0.5778.8PsAffx.C47000085_atAt1g29040--2e+0At1g043502-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.2126.6GmaAffx.89641.1.A1_atAt1g2904014-3-3 related protein SGF14A-2e-111At5g16050GRF5 (GENERAL REGULATORY FACTOR 5)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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