CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.1402.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g29040: unknown protein (HF=4e+0)

Module size 6 genes

NF 0.59

%ile 78.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.96 Zm.1402.1.S1_at BF729248 - - 4e+0 At1g29040 unknown protein O.I. H.G. S.X.
0.91 99.0 0.96 Zm.4338.3.S1_at AW000126 - - 3e+0 At5g27170 unknown protein O.I. H.G. S.X.
0.80 94.0 0.96 Zm.4350.1.A1_at AW091239 - - 1e+0 At5g49334 unknown protein O.I. H.G. S.X.
0.73 89.9 0.96 Zm.13325.1.S1_at BQ279643 - - 3e+0 At4g27140 2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1 O.I. H.G. S.X.
0.37 42.3 0.96 Zm.13484.1.S1_at AY108906.1 - - 3e-1 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) O.I. H.G. S.X.
0.32 33.4 0.96 Zm.3875.1.S1_at BQ539306 - - 2e-31 At1g50200 ALATS (ALANYL-TRNA SYNTHETASE) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.2 98.2 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8 98.1 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8 98.1 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6 98.1 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5 98.1 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3 98.0 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1 98.0 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9 97.9 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5 97.5 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.0 90.2 GSM202314 Mo17 19 day after pollination embryo tissue, biological replicate 2 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g29040, orthologous to the query gene, Zm.1402.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.31 33.8 At1g29040 839778 unknown protein F:unknown;P:unknown;C:chloroplast, vacuole;BOP O.I. H.G. S.X.
0.80 89.8 At5g10700 830935 aminoacyl-tRNA hydrolase/ protein tyrosine phosphatase F:aminoacyl-tRNA hydrolase activity, protein tyrosine phosphatase activity;P:protein amino acid dephosphorylation, translation;C:unknown;MOPF O.I. H.G. S.X.
0.60 75.7 At5g06430 830531 thioredoxin-related F:unknown;P:unknown;C:unknown;BPO O.I. H.G. S.X.
0.40 50.8 At3g24030 821988 hydroxyethylthiazole kinase family protein F:catalytic activity, hydroxyethylthiazole kinase activity;P:thiamin biosynthetic process;C:cellular_component unknown;BOFAPM O.I. H.G. S.X.
0.40 50.8 At4g18230 827549 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFMOPA O.I. H.G. S.X.
0.40 50.8 At4g37020 829856 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBV O.I. H.G. S.X.
0.31 33.8 At5g16150 831472 PGLCT (PLASTIDIC GLC TRANSLOCATOR) Encodes a putative plastidic glucose transporter. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage