Co-expression analysis

Gene ID	Zm.13992.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g08350: GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) (HF=9e-7)
Module size	43 genes
NF	0.27
%ile	23.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.9	0.91	Zm.13992.2.S1_at	BG265993	-	-	9e-7	At4g08350	GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.92	Zm.2591.3.A1_x_at	CF003515	autophagy-related 8b	-	3e-48	At1g62040	ATG8C (autophagy 8c)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.94	Zm.5322.1.A1_at	AY103724.1	hypothetical protein LOC100274445	-	9e-152	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.95	Zm.8656.1.A1_at	BM336261	hypothetical protein LOC100192906	-	4e-2	At5g27440	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.94	Zm.14963.1.S1_at	AY107744.1	-	-	4e-1	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.96	ZmAffx.1132.1.S1_at	AW330934	-	-	3e+0	At5g18040	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.94	Zm.14319.1.A1_at	M60526.1	protein cdc2 kinase	-	3e-12	At3g48750	CDC2 (CELL DIVISION CONTROL 2)	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.93	Zm.1579.1.S1_at	AY107917.1	AMP-binding protein	-	3e-7	At1g77240	AMP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.96	Zm.4967.1.A1_at	CF043925	initiator-binding protein	-	2e-12	At3g46590	TRFL1 (TRF-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.96	Zm.5922.1.A1_at	CN844887	DNA-binding protein S1FA2	-	2e+0	At1g16250	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.95	Zm.13110.1.S1_a_at	AY105068.1	hypothetical protein LOC100193124	-	2e-1	At2g27390	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.96	Zm.2920.1.A1_at	AI673848	hypothetical protein LOC100272381	-	6e-1	At3g06300	AT-P4H-2 (A. THALIANA P4H ISOFORM 2)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.90	Zm.17836.1.A1_x_at	CK370651	60S ribosomal protein L31	-	4e-22	At5g56710	60S ribosomal protein L31 (RPL31C)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.96	Zm.4164.1.A1_x_at	BM079246	-	-	5e+0	At3g01860	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.95	Zm.10219.1.S1_at	CK368359	Hypothetical LOC542286	-	2e-10	At1g25155	anthranilate synthase beta subunit, putative	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.96	Zm.6763.3.S1_at	AY105013.1	-	-	1e+0	At3g59845	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.95	Zm.19319.1.A1_at	BI992453	hypothetical protein LOC100274532	-	7e+0	At5g64560	magnesium transporter CorA-like family protein (MRS2-2)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.3808.1.S1_at	CF010880	low-molecular-weight cysteine-rich protein LCR68	-	5e+0	At4g02850	phenazine biosynthesis PhzC/PhzF family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.94	ZmAffx.975.1.S1_at	AI833930	Nucleosome/chromatin assembly factor C	-	2e-1	At1g23150	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.95	Zm.4300.2.S1_a_at	AI881611	hypothetical protein LOC100274411	-	3e-8	At5g09880	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.810.1.S1_at	CF006379	-	-	6e-69	At5g45550	mob1/phocein family protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.95	Zm.4973.1.S1_at	AY104506.1	hypothetical protein LOC100274164	-	2e-3	At1g03457	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.96	Zm.18946.1.A1_at	BM338625	hypothetical protein LOC100278262	-	1e+0	At1g69660	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.94	Zm.17550.1.A1_at	CK368201	hypothetical protein LOC100275288	-	1e+0	At1g56450	PBG1	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.96	Zm.1056.1.S1_at	AW120162	ribosomal protein S22 homolog	-	3e-17	At5g62300	40S ribosomal protein S20 (RPS20C)	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.96	Zm.6321.1.A1_at	AI691388	-	-	2e-1	At3g17440	NPSN13 (NOVEL PLANT SNARE 13)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.95	Zm.6514.1.A1_at	CF636002	hypothetical protein LOC100276806	-	7e-1	At5g38317	LCR58 (Low-molecular-weight cysteine-rich 58)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.97	Zm.13427.1.S1_at	AF124738.1	hypothetical protein LOC100194389	-	1e-7	At4g21520	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.95	Zm.2725.1.A1_at	BE510988	-	-	6e+0	Atmg01040	-	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.93	Zm.2157.5.A1_x_at	CK348105	ribosomal protein S11	-	2e-35	At5g23740	RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA)	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.94	Zm.17562.1.S1_at	CF040421	hypothetical protein LOC100280253	-	5e+0	At1g48330	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.96	Zm.14034.1.A1_at	CD955909	hypothetical protein LOC100273157	-	4e-14	At5g53140	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.96	Zm.13021.1.A1_at	CK787287	-	-	4e-1	At4g15885	kinesin motor protein-related	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.94	Zm.5565.1.S2_at	CF631185	hypothetical protein LOC100194102	-	9e-11	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.95	Zm.6175.1.A1_at	AI714944	hypothetical protein LOC100191780	-	2e+0	At5g64620	C/VIF2 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 2)	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.96	Zm.867.1.A1_at	AY105682.1	hypothetical protein LOC100273308	-	4e-8	At4g20410	GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.96	Zm.13015.1.S1_at	BG836655	-	-	4e-1	At1g75690	chaperone protein dnaJ-related	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.97	Zm.6105.1.S1_at	BG517834	-	-	4e+0	At2g27280	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.97	Zm.4137.1.S1_at	AI855128	-	-	2e+0	At4g21330	DYT1 (DYSFUNCTIONAL TAPETUM 1)	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.95	Zm.3620.1.S1_at	AW076176	-	-	5e+0	At5g28610	-	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.94	Zm.292.1.S1_at	L46397.1	MADS box protein	-	2e-7	At3g61120	AGL13 (AGAMOUS-LIKE 13)	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.96	Zm.9814.1.A1_at	BM351590	-	-	4e+0	At5g26840	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	2.9	0.95	Zm.5676.1.A1_at	AY103939.1	-	-	3e-1	At5g14710	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.3	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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