Co-expression analysis

Gene ID	Zm.13932.1.S1_x_at
Gene name	phosphoenolpyruvate carboxylase /// phosphoenolpyruvate carboxylase1 /// phosphoenolpyruvate carboxylase
Homology with Arabidopsis	Similar to At3g42628: phosphoenolpyruvate carboxylase-related / PEP carboxylase-related (HF=3e-4)
Module size	8 genes
NF	0.70
%ile	91.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	90.8	0.91	Zm.13932.1.S1_x_at	X63871.1	phosphoenolpyruvate carboxylase /// phosphoenolpyruvate carboxylase1 /// phosphoenolpyruvate carboxylase	-	3e-4	At3g42628	phosphoenolpyruvate carboxylase-related / PEP carboxylase-related	O.I.	H.G.	S.X.	Please select
0.88	96.7	0.92	Zm.6357.1.S1_at	AY103601.1	catalase1	-	8e-85	At4g35090	CAT2 (CATALASE 2)	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.93	Zm.6351.1.S1_at	AY105055.1	hypothetical protein LOC100277708	-	5e-1	At5g57685	AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)	O.I.	H.G.	S.X.	Please select
0.74	90.3	0.94	Zm.1207.1.A1_at	CO525598	growth-regulating factor 11-like	-	6e+0	At5g15948	CPuORF10 (Conserved peptide upstream open reading frame 10)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.93	ZmAffx.123.1.S1_at	AI665878	-	-	8e-1	At5g15200	40S ribosomal protein S9 (RPS9B)	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.93	ZmAffx.1108.1.A1_at	AW216343	hypothetical protein LOC100191835	-	3e+0	At4g12810	F-box family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.93	Zm.5897.1.A1_at	CA404128	hypothetical protein LOC100193663	-	9e-38	At3g47520	MDH (MALATE DEHYDROGENASE)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.93	Zm.15578.1.A1_at	CD448284	-	-	8e+0	At5g61310	cytochrome c oxidase subunit Vc, putative / COX5C, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.7	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.0	94.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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