Co-expression analysis

Gene ID	Zm.13931.1.A1_x_at
Gene name
Homology with Arabidopsis	Similar to At1g09630: ATRAB11C (ARABIDOPSIS RAB GTPASE 11C) (HF=8e-1)
Module size	6 genes
NF	0.41
%ile	46.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	71.6	0.97	Zm.13931.1.A1_x_at	Z35302.1	-	-	8e-1	At1g09630	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.97	Zm.3283.2.A1_a_at	BM335982	hypothetical protein LOC100192072	-	2e+0	At3g46110	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	Zm.3930.1.S1_at	BQ538158	AMP-binding protein	-	8e-37	At3g05970	LACS6 (long-chain acyl-CoA synthetase 6)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.98	Zm.9285.1.A1_at	BM339972	disease resistance response protein 206	-	6e+0	At5g46874	-	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.98	Zm.9900.1.A1_at	BM351046	-	-	2e-2	At5g28610	-	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.98	Zm.17512.1.S1_at	CF057479	hypothetical protein LOC100192897	-	2e-9	At4g25590	ADF7 (actin depolymerizing factor 7)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.9	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage