Co-expression analysis

Gene ID Zm.1390.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g21230: 4CL5 (4-coumarate:CoA ligase 5) (HF=3e-3)
Module size 6 genes
NF 0.09
%ile 5.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7188.20.79Zm.1390.1.A1_atAY106966.1--3e-3At3g212304CL5 (4-coumarate:CoA ligase 5)O.I.H.G.S.X.
0.4455.70.86ZmAffx.294.1.S1_atAI670427--3e+0At3g4459060S acidic ribosomal protein P2 (RPP2D)O.I.H.G.S.X.
0.2928.10.87Zm.13911.1.S1_atAY109626.1potassium channel protein ZMK2-6e-3At4g18290KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2)O.I.H.G.S.X.
0.104.60.82ZmAffx.31.1.S1_atAI657417--8e-1At3g55880unknown proteinO.I.H.G.S.X.
0.062.30.83Zm.6672.1.S1_atCF636709Blue copper protein-4e-1At1g72230plastocyanin-like domain-containing proteinO.I.H.G.S.X.
0.031.10.86Zm.6302.1.A1_atCO533765hypothetical protein LOC100192816-4e-1At2g03090ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.398.7GSM162264Mutant 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
7.997.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.997.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.697.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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