| Gene ID | Zm.13859.1.S1_at |
| Gene name | methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1 |
| Homology with Arabidopsis | Similar to At3g12290: tetrahydrofolate dehydrogenase/cyclohydrolase, putative (HF=1e-12) |
| Module size | 6 genes |
| NF | 0.51 |
| %ile | 65.8 |
| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.63 | 81.1 | 0.99 | Zm.13859.1.S1_at | AF439724.1 | methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1 | - | 1e-12 | At3g12290 | tetrahydrofolate dehydrogenase/cyclohydrolase, putative | O.I. | H.G. | S.X. | |
| 0.77 | 92.1 | 0.99 | Zm.405.1.A1_at | AF037034.2 | hypothetical LOC541674 | - | 2e-1 | At5g05340 | peroxidase, putative | O.I. | H.G. | S.X. | |
| 0.50 | 65.7 | 0.99 | Zm.6076.1.A1_a_at | AY111015.1 | COX VIIa-like protein | - | 3e-1 | At2g21195 | unknown protein | O.I. | H.G. | S.X. | |
| 0.44 | 55.7 | 0.99 | Zm.17316.1.A1_at | CK369406 | - | - | 4e+0 | At5g38317 | LCR58 (Low-molecular-weight cysteine-rich 58) | O.I. | H.G. | S.X. | |
| 0.42 | 51.3 | 0.99 | Zm.5357.1.S1_at | AI619398 | hypothetical protein LOC100273070 | - | 8e-4 | At1g03110 | transducin family protein / WD-40 repeat family protein | O.I. | H.G. | S.X. | |
| 0.29 | 28.1 | 0.99 | Zm.2952.1.A1_a_at | CF629660 | hypothetical protein LOC100192920 | - | 2e-3 | At3g26680 | SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) | O.I. | H.G. | S.X. |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
|---|---|---|---|---|---|---|
| 10.9 | 98.5 | GSM320451 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 10.8 | 98.5 | GSM320450 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 10.7 | 98.5 | GSM320455 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 9.5 | 98.3 | GSM320447 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 8.9 | 98.2 | GSM320471 | protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 8.9 | 98.2 | GSM320453 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 7.7 | 97.9 | GSM320467 | protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 7.6 | 97.9 | GSM320452 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 7.2 | 97.8 | GSM320454 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 7.1 | 97.7 | GSM320448 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| VF | %ile | Gene ID | Repr. ID | Gene Name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.77 | 93.1 | Os05g0150800 | At3g12290 | - | C-1-tetrahydrofolate synthase, cytoplasmic (C1-THFsynthase) [Includes: Methylenetetrahydrofolatedehydrogenase (EC 1.5.1.5) | 3e-18 | At3g12290 | tetrahydrofolate dehydrogenase/cyclohydrolase, putative | O.I. | H.G. | S.X. | |
| 0.42 | 53.9 | Os06g0729800 | At3g12290 | - | Isopentenyl transferase-like domain containingprotein | 3e-3 | At5g20040 | ATIPT9 | O.I. | H.G. | S.X. | |
| 0.41 | 52.4 | Os09g0454100 | At3g12290 | - | Rhomboid-like protein family protein | 3e+0 | At2g33810 | SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3) | O.I. | H.G. | S.X. | |
| 0.38 | 46.9 | Os03g0684000 | At3g12290 | - | Zn-finger, GATA type domain containing protein | 1e-2 | At3g21175 | ZML1 (ZIM-LIKE 1) | O.I. | H.G. | S.X. | |
| 0.37 | 45.0 | Os07g0264800 | At3g12290 | - | GCN5-related N-acetyltransferase domain containingprotein | 2e+0 | At3g13950 | unknown protein | O.I. | H.G. | S.X. | |
| 0.33 | 38.8 | Os01g0392100 | At3g12290 | - | Conserved hypothetical protein | 3e-2 | At3g12820 | AtMYB10 (myb domain protein 10) | O.I. | H.G. | S.X. | |
| 0.33 | 38.8 | Os01g0796500 | At3g12290 | - | HAD-superfamily, subfamily IIIA phosphatase domaincontaining protein | 8e-1 | At3g22090 | unknown protein | O.I. | H.G. | S.X. | |
| 0.32 | 36.3 | Os01g0747700 | At3g12290 | - | RNA-binding S4 domain containing protein | 5e-14 | At1g53120 | RNA-binding S4 domain-containing protein | O.I. | H.G. | S.X. | |
| 0.31 | 34.5 | Os12g0103000 | At3g12290 | - | Mitochondrial substrate carrier family protein | 3e-16 | At2g35800 | mitochondrial substrate carrier family protein | O.I. | H.G. | S.X. | |
| 0.31 | 34.5 | Os04g0650500 | At3g12290 | - | Conserved hypothetical protein | 2e-1 | At1g59840 | CCB4 (COFACTOR ASSEMBLY OF COMPLEX C) | O.I. | H.G. | S.X. | |
| 0.29 | 31.1 | Os06g0155600 | At3g12290 | - | Peptidase S16, lon protease family protein | 1e+0 | At3g10420 | sporulation protein-related | O.I. | H.G. | S.X. | |
| 0.28 | 31.1 | Os04g0278900 | At3g12290 | - | Dihydrouridine synthase, DuS family protein | 2e-3 | At3g63510 | FAD binding / catalytic/ tRNA dihydrouridine synthase | O.I. | H.G. | S.X. | |
| 0.28 | 31.1 | Os02g0321500 | At3g12290 | - | Cellular retinaldehyde-binding)/triple function,C-terminal domain containing protein | 2e-4 | At5g63060 | transporter | O.I. | H.G. | S.X. | |
| 0.24 | 22.4 | Os02g0741300 | At3g12290 | - | Glycoside hydrolase, family 47 protein | 1e-33 | At1g27520 | glycoside hydrolase family 47 protein | O.I. | H.G. | S.X. | |
| 0.20 | 16.5 | Os01g0693900 | At3g12290 | - | Peptidyl-tRNA hydrolase family protein | 1e-8 | At1g18440 | peptidyl-tRNA hydrolase family protein | O.I. | H.G. | S.X. |
| Arabidopsis_thaliana |
| Glycine_max |
| Hordeum_vulgare |
| Populus_trichocarpa |
| Triticum_aestivum |
| Vitis_vinifera |
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