Co-expression analysis

Gene ID Zm.13859.1.S1_at
Gene name methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1
Homology with ArabidopsisSimilar to At3g12290: tetrahydrofolate dehydrogenase/cyclohydrolase, putative (HF=1e-12)
Module size 6 genes
NF 0.51
%ile 65.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6381.10.99Zm.13859.1.S1_atAF439724.1methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1-1e-12At3g12290tetrahydrofolate dehydrogenase/cyclohydrolase, putativeO.I.H.G.S.X.
0.7792.10.99Zm.405.1.A1_atAF037034.2hypothetical LOC541674-2e-1At5g05340peroxidase, putativeO.I.H.G.S.X.
0.5065.70.99Zm.6076.1.A1_a_atAY111015.1COX VIIa-like protein-3e-1At2g21195unknown proteinO.I.H.G.S.X.
0.4455.70.99Zm.17316.1.A1_atCK369406--4e+0At5g38317LCR58 (Low-molecular-weight cysteine-rich 58)O.I.H.G.S.X.
0.4251.30.99Zm.5357.1.S1_atAI619398hypothetical protein LOC100273070-8e-4At1g03110transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.2928.10.99Zm.2952.1.A1_a_atCF629660hypothetical protein LOC100192920-2e-3At3g26680SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.998.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.798.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.598.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320471protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.797.9GSM320467protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os05g0150800, orthologous to the query gene, Zm.13859.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7793.1Os05g0150800At3g12290-C-1-tetrahydrofolate synthase, cytoplasmic (C1-THFsynthase) [Includes: Methylenetetrahydrofolatedehydrogenase (EC 1.5.1.5)3e-18At3g12290tetrahydrofolate dehydrogenase/cyclohydrolase, putativeO.I.H.G.S.X.
0.4253.9Os06g0729800At3g12290-Isopentenyl transferase-like domain containingprotein3e-3At5g20040ATIPT9O.I.H.G.S.X.
0.4152.4Os09g0454100At3g12290-Rhomboid-like protein family protein3e+0At2g33810SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3)O.I.H.G.S.X.
0.3846.9Os03g0684000At3g12290-Zn-finger, GATA type domain containing protein1e-2At3g21175ZML1 (ZIM-LIKE 1)O.I.H.G.S.X.
0.3745.0Os07g0264800At3g12290-GCN5-related N-acetyltransferase domain containingprotein2e+0At3g13950unknown proteinO.I.H.G.S.X.
0.3338.8Os01g0392100At3g12290-Conserved hypothetical protein3e-2At3g12820AtMYB10 (myb domain protein 10)O.I.H.G.S.X.
0.3338.8Os01g0796500At3g12290-HAD-superfamily, subfamily IIIA phosphatase domaincontaining protein8e-1At3g22090unknown proteinO.I.H.G.S.X.
0.3236.3Os01g0747700At3g12290-RNA-binding S4 domain containing protein5e-14At1g53120RNA-binding S4 domain-containing proteinO.I.H.G.S.X.
0.3134.5Os12g0103000At3g12290-Mitochondrial substrate carrier family protein3e-16At2g35800mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.3134.5Os04g0650500At3g12290-Conserved hypothetical protein2e-1At1g59840CCB4 (COFACTOR ASSEMBLY OF COMPLEX C)O.I.H.G.S.X.
0.2931.1Os06g0155600At3g12290-Peptidase S16, lon protease family protein1e+0At3g10420sporulation protein-relatedO.I.H.G.S.X.
0.2831.1Os04g0278900At3g12290-Dihydrouridine synthase, DuS family protein2e-3At3g63510FAD binding / catalytic/ tRNA dihydrouridine synthaseO.I.H.G.S.X.
0.2831.1Os02g0321500At3g12290-Cellular retinaldehyde-binding)/triple function,C-terminal domain containing protein2e-4At5g63060transporterO.I.H.G.S.X.
0.2422.4Os02g0741300At3g12290-Glycoside hydrolase, family 47 protein1e-33At1g27520glycoside hydrolase family 47 proteinO.I.H.G.S.X.
0.2016.5Os01g0693900At3g12290-Peptidyl-tRNA hydrolase family protein1e-8At1g18440peptidyl-tRNA hydrolase family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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