Co-expression analysis

Gene ID	Zm.13815.1.S1_at
Gene name	Grx_C2.2 - glutaredoxin subgroup I
Homology with Arabidopsis	Similar to At5g63030: glutaredoxin, putative (HF=7e-3)
Module size	6 genes
NF	0.47
%ile	57.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	58.4	0.97	Zm.13815.1.S1_at	CF057002	Grx_C2.2 - glutaredoxin subgroup I	-	7e-3	At5g63030	glutaredoxin, putative	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.97	Zm.3885.1.S1_at	CK145224	Pectin methylesterase1	-	6e-2	At3g06830	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.6975.1.S1_at	AW066660	hypothetical protein LOC100272316	-	4e-40	At3g20050	ATTCP-1	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.4560.2.S1_at	AY106577.1	-	-	2e-11	At3g59350	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.98	Zm.14149.1.A1_at	AY111524.1	-	-	1e+0	At5g55135	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.98	Zm.8378.1.A1_at	BM073885	hypothetical protein LOC100273227	-	6e+0	At3g26860	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.8	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM205422	Mo17xB73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

Inter-species module comparison

A co-expression module including the wheat gene, Ta.1071.1.S1_at, orthologous to the query gene, Zm.13815.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	98.9	Ta.1071.1.S1_at	At5g63030	glutaredoxin	-	8e-3	At5g63030	glutaredoxin, putative	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.1071.1.S1_x_at	At5g63030	glutaredoxin	-	8e-3	At5g63030	glutaredoxin, putative	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.28258.1.S1_at	At5g63030	-	-	4e-3	At4g15790	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	TaAffx.128418.36.S1_at	At5g63030	-	-	3e-1	At3g62810	complex 1 family protein / LVR family protein	O.I.	H.G.	S.X.	Please select
0.06	7.6	Ta.459.1.S1_at	At5g63030	-	-	4e+0	At4g09840	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	Ta.6227.1.S1_at	At5g63030	Small GTP-binding protein	-	4e-30	At4g17170	RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)	O.I.	H.G.	S.X.	Please select
0.02	3.6	Ta.14396.1.S1_at	At5g63030	-	-	3e-58	At3g18820	ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F)	O.I.	H.G.	S.X.	Please select
0.02	3.6	Ta.23786.3.S1_a_at	At5g63030	-	-	1e+0	At3g17280	F-box family protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	Ta.14439.2.S1_a_at	At5g63030	-	-	1e+0	At2g02440	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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