Co-expression analysis

Gene ID	Zm.13815.1.S1_at
Gene name	Grx_C2.2 - glutaredoxin subgroup I
Homology with Arabidopsis	Similar to At5g63030: glutaredoxin, putative (HF=7e-3)
Module size	6 genes
NF	0.47
%ile	57.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	58.4	0.97	Zm.13815.1.S1_at	CF057002	Grx_C2.2 - glutaredoxin subgroup I	-	7e-3	At5g63030	glutaredoxin, putative	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.97	Zm.3885.1.S1_at	CK145224	Pectin methylesterase1	-	6e-2	At3g06830	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.6975.1.S1_at	AW066660	hypothetical protein LOC100272316	-	4e-40	At3g20050	ATTCP-1	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.4560.2.S1_at	AY106577.1	-	-	2e-11	At3g59350	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.98	Zm.14149.1.A1_at	AY111524.1	-	-	1e+0	At5g55135	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.98	Zm.8378.1.A1_at	BM073885	hypothetical protein LOC100273227	-	6e+0	At3g26860	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.8	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM205422	Mo17xB73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.29124.1.A1_at, orthologous to the query gene, Zm.13815.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.42	68.6	PtpAffx.29124.1.A1_at	At5g63030	-	-	2e-1	At1g28630	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.215105.1.S1_at	At5g63030	-	-	3e-16	At4g38270	GAUT3 (Galacturonosyltransferase 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.206003.1.S1_at	At5g63030	cytochrome P450	-	8e-1	At5g52400	CYP715A1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.212797.1.S1_at	At5g63030	hypothetical protein	-	9e-1	At3g28820	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.220488.1.S1_at	At5g63030	-	-	4e+0	At3g51590	LTP12 (LIPID TRANSFER PROTEIN 12)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	Ptp.8120.1.A1_at	At5g63030	hypothetical protein	-	7e+0	At5g35698	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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