Co-expression analysis

Gene ID	Zm.13797.2.A1_at
Gene name	hypothetical protein LOC100279789
Homology with Arabidopsis	Similar to At3g20770: EIN3 (ETHYLENE-INSENSITIVE3) (HF=8e-4)
Module size	10 genes
NF	0.48
%ile	60.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	71.6	0.96	Zm.13797.2.A1_at	AY105820.1	hypothetical protein LOC100279789	-	8e-4	At3g20770	EIN3 (ETHYLENE-INSENSITIVE3)	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.97	Zm.13250.1.S1_at	CN844210	Zea mays MADS14	-	3e-2	At2g03710	SEP4 (SEPALLATA 4)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.17843.2.A1_at	CD999046	hypothetical protein LOC100216964	-	6e-1	At2g47910	CRR6 (chlororespiratory reduction 6)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.18352.1.S1_at	CO527044	glucan endo-1,3-beta-glucosidase, acidic isoform	-	1e+1	At5g62470	MYB96 (myb domain protein 96)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.12958.1.A1_at	CA402421	hypothetical protein LOC100217276	-	9e+0	At5g43245	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	Zm.7397.1.A1_at	BQ539216	hypothetical protein LOC100277233	-	5e-4	At3g05550	hypoxia-responsive family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.96	Zm.7826.2.A1_at	AY107684.1	-	-	5e+0	At4g22517	-	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.98	Zm.6606.1.A1_at	AI467702	hypothetical protein LOC100272956	-	8e-7	At3g53500	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.7727.4.S1_s_at	CF972403	polyubiquitin containing 7 ubiquitin monomers /// ubiquitin /// polyubiquitin	-	2e-102	At4g05320	UBQ10 (POLYUBIQUITIN 10)	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.97	Zm.18351.1.S1_at	CO529439	-	-	2e+0	At2g21140	ATPRP2 (PROLINE-RICH PROTEIN 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.1	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.1	90.8	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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