Co-expression analysis

Gene ID	Zm.13777.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g27435: unknown protein (HF=8e-8)
Module size	13 genes
NF	0.48
%ile	59.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	82.1	0.87	Zm.13777.1.A1_at	CK347797	-	-	8e-8	At1g27435	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.89	Zm.2772.1.A1_at	AW067188	hypothetical protein LOC100276230	-	4e+0	At1g09176	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.91	Zm.4840.1.A1_s_at	CD953132	peroxisomal-coenzyme A synthetase	-	3e-1	At3g48990	AMP-dependent synthetase and ligase family protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.91	Zm.10411.2.S1_at	BU079924	terminal acidic SANT 1	-	2e-1	At1g15720	TRFL5 (TRF-LIKE 5)	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.92	Zm.16517.1.A1_at	CO534088	-	-	1e+0	At2g05430	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.91	Zm.6.2.S1_at	CK347931	-	-	4e-1	At5g17650	glycine/proline-rich protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.90	Zm.9042.1.A1_at	AY044158.1	hypothetical protein LOC100273864	-	7e-5	At3g51190	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.91	Zm.6.2.A1_at	CK347931	-	-	4e-1	At5g17650	glycine/proline-rich protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.93	Zm.14435.1.S1_at	AY109360.1	60S ribosomal protein L22-2	-	3e-35	At3g05560	60S ribosomal protein L22-2 (RPL22B)	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.91	Zm.4161.1.A1_at	AY104817.1	-	-	6e-5	At3g23640	HGL1 (heteroglycan glucosidase 1)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.93	Zm.18404.1.S1_at	CO521356	hypothetical protein LOC100278048	-	2e+0	At5g30341	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.93	Zm.3583.2.A1_a_at	AY105229.1	hypothetical protein LOC100191673	-	2e+0	At4g30600	signal recognition particle receptor alpha subunit family protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.92	Zm.12285.1.A1_at	AY104534.1	hypothetical protein LOC100192782	-	2e+0	At5g15970	KIN2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.6	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
6.8	97.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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