Co-expression analysis

Gene ID	Zm.13760.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g27280: zinc finger (DNL type) family protein (HF=5e+0)
Module size	15 genes
NF	0.41
%ile	47.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	87.0	0.97	Zm.13760.1.A1_at	AY105817.1	-	-	5e+0	At5g27280	zinc finger (DNL type) family protein	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.98	Zm.6067.1.S1_at	CA398401	-	-	6e-2	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.98	Zm.4810.1.S1_at	AI745785	-	-	5e+0	At3g60390	HAT3 (HOMEOBOX-LEUCINE ZIPPER PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.98	Zm.16824.2.S1_at	BM340171	-	-	1e+0	At3g07170	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.9834.1.A1_at	AY112139.1	-	-	2e+1	At5g28919	-	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.4283.2.S1_at	AY109824.1	-	-	4e-26	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.98	Zm.14802.1.S1_at	CK371044	hypothetical protein LOC100277516	-	6e+0	At3g13674	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.98	Zm.6597.1.A1_at	AY106822.1	hypothetical protein LOC100279221	-	8e-9	At2g20050	ATP binding / cAMP-dependent protein kinase regulator/ catalytic/ protein kinase/ protein serine/threonine phosphatase	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.98	Zm.5450.1.A1_at	CO521828	hypothetical protein LOC100216592	-	1e-1	At1g08080	ACA7 (ALPHA CARBONIC ANHYDRASE 7)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.98	Zm.6715.2.A1_at	BM337592	RING finger and CHY zinc finger domain-containing protein 1	-	3e-10	At5g25560	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.98	Zm.9730.1.A1_at	BM337086	-	-	5e+0	At4g02830	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.14057.2.A1_at	AF457961.1	-	-	8e-20	At4g22910	FZR2 (FIZZY-RELATED 2)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	Zm.155.2.S1_at	AY109498.1	-	-	4e-3	At4g32400	SHS1 (SODIUM HYPERSENSITIVE 1)	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.98	Zm.5615.1.S1_at	AY106412.1	DHHC zinc finger domain containing protein	-	5e-1	At1g78560	bile acid:sodium symporter family protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.98	Zm.3169.2.S1_at	CA404972	hypothetical protein LOC100279753	-	4e-53	At5g44635	minichromosome maintenance family protein / MCM family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.0	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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