Co-expression analysis

Gene ID	Zm.13759.2.A1_at
Gene name	hypothetical protein LOC100279293
Homology with Arabidopsis	Similar to At5g63840: RSW3 (RADIAL SWELLING 3) (HF=7e-3)
Module size	29 genes
NF	0.30
%ile	27.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	97.0	0.93	Zm.13759.2.A1_at	CF627386	hypothetical protein LOC100279293	-	7e-3	At5g63840	RSW3 (RADIAL SWELLING 3)	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.96	Zm.4304.1.S1_at	AI834719	-	-	1e-3	At3g18600	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.95	Zm.17395.1.A1_at	CK347732	hypothetical protein LOC100191730	-	5e+0	At2g22920	serine carboxypeptidase S10 family protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.96	Zm.15722.2.A1_at	CA404232	hypothetical protein LOC100273877	-	2e+0	At3g06110	MKP2 (MAPK PHOSPHATASE 2)	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.96	Zm.6763.3.S1_at	AY105013.1	-	-	1e+0	At3g59845	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.97	Zm.17628.1.S1_at	CN845468	-	-	6e-17	At2g34560	katanin, putative	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.95	Zm.6962.1.S1_at	CA404020	sorbitol dehydrogenase	-	2e-1	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.94	Zm.6746.1.A1_at	CK347370	hypothetical protein LOC100279874	-	2e-3	At3g63460	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.95	Zm.8121.1.A1_at	CF630483	hypothetical protein LOC100276169	-	3e-2	At1g63780	IMP4	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.96	Zm.38.1.S1_at	M60215.1	ser/thr protein phosphatase1	-	1e-12	At2g29400	TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1)	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.96	Zm.17366.1.S1_s_at	CK371241	-	-	1e+1	At5g20060	phospholipase/carboxylesterase family protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.95	Zm.19355.1.A1_at	BG549786	STIP1 homology and U box-containing protein 1	-	2e+0	At3g14820	carboxylesterase/ hydrolase, acting on ester bonds / lipase	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.95	Zm.2283.1.A1_at	BF728022	ras-related protein Rab11C	-	1e-10	At3g46830	ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.96	Zm.7938.1.A1_at	BM079591	glycosyltransferase	-	7e+0	At5g42567	-	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.95	Zm.5462.1.A1_at	AW055416	-	-	7e-1	At1g08125	Expressed protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.13853.1.S1_at	AF272753.1	kinesin heavy chain	-	1e-14	At1g63640	kinesin motor protein-related	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.96	Zm.7671.1.A1_at	BM073122	hypothetical protein LOC100272470	-	8e-2	At4g00232	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.95	Zm.7914.1.A1_at	AY103800.1	hypothetical protein LOC100277669	-	5e-11	At3g21175	ZML1 (ZIM-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.7541.1.A1_at	BM341407	hypothetical protein LOC100192095	-	6e+0	At3g43110	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.95	Zm.19319.1.A1_at	BI992453	hypothetical protein LOC100274532	-	7e+0	At5g64560	magnesium transporter CorA-like family protein (MRS2-2)	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.95	Zm.867.1.A1_at	AY105682.1	hypothetical protein LOC100273308	-	4e-8	At4g20410	GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.97	Zm.6863.2.A1_at	CF637783	hypothetical protein LOC100193970	-	7e-67	At1g48410	AGO1 (ARGONAUTE 1)	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.96	ZmAffx.1118.2.A1_at	AW267189	-	-	8e-1	At2g27360	lipase, putative	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.96	Zm.19173.1.A1_at	CO524394	-	-	5e+0	At4g33625	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.96	Zm.2660.1.A1_at	AW066755	hypothetical protein LOC100194122	-	3e-1	At3g19180	ARC6H	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.95	Zm.13275.1.S1_at	CO520423	lethal leaf spot1	-	2e-23	At3g44880	ACD1 (ACCELERATED CELL DEATH 1)	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.96	Zm.10293.1.S1_at	AY110737.1	light-inducible protein CPRF-2	-	6e-1	At3g50651	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.97	Zm.10534.1.A1_x_at	CO049306	receptor protein kinase CLAVATA1	-	2e+0	At2g36890	RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)	O.I.	H.G.	S.X.	Please select
0.12	5.9	0.95	Zm.9570.2.A1_x_at	BM078097	-	-	5e+0	At3g22070	proline-rich family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.2	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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