Co-expression analysis

Gene ID	Zm.13739.1.S1_at
Gene name	hypothetical protein LOC100273644
Homology with Arabidopsis	Similar to At5g15390: tRNA/rRNA methyltransferase (SpoU) family protein (HF=3e+0)
Module size	6 genes
NF	0.16
%ile	11.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.9	0.90	Zm.13739.1.S1_at	AY106154.1	hypothetical protein LOC100273644	-	3e+0	At5g15390	tRNA/rRNA methyltransferase (SpoU) family protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.89	Zm.18059.1.A1_at	CO522651	disease resistance response protein 206	-	8e+0	At2g24617	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.93	Zm.2862.2.A1_a_at	AY112482.1	calnexin	-	2e-44	At5g07340	calnexin, putative	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.91	Zm.2422.1.A1_at	AY104192.1	pyrophosphate--fructose 6-phosphate 1-phosphotransferase beta subunit	-	6e-73	At1g12000	pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.91	ZmAffx.192.1.A1_at	AI668442	-	-	2e-1	At1g51930	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.05	1.9	0.88	Zm.13225.1.S1_s_at	CD991161	ubiquitin-like protein SMT3 /// ubiquitin-like protein SMT3	-	6e-25	At4g26840	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.0	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.0	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM253272	ZM_4.5d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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