Co-expression analysis

Gene ID	Zm.13728.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g55500: ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) (HF=1e-14)
Module size	13 genes
NF	0.32
%ile	30.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	90.8	0.90	Zm.13728.2.S1_at	AY106266.1	-	-	1e-14	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.93	Zm.8477.1.S1_at	CD991129	VAMP protein SEC22	-	3e+0	At3g12090	TET6 (TETRASPANIN6)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.90	Zm.11626.1.A1_a_at	CA404483	hypothetical protein LOC100272474	-	1e+1	At5g49940	NFU2 (NIFU-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.93	Zm.8540.1.A1_at	BM079841	hypothetical protein LOC100193457	-	4e-36	At5g63440	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.94	Zm.5401.2.A1_at	AY104186.1	hypothetical protein LOC100274064	-	9e-121	At1g53750	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.94	Zm.11627.1.A1_x_at	BM379409	-	-	1e+0	At2g26260	AT3BETAHSD/D2 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.94	Zm.6601.2.A1_a_at	BM078978	hypothetical protein LOC100191456	-	1e-17	At3g18190	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.95	Zm.7788.1.A1_at	CK347752	anthocyanidin 3-O-glucosyltransferase	-	9e-1	At3g24093	-	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.95	Zm.2781.1.S1_at	CF007960	-	-	5e+0	At4g35480	RHA3B	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.91	Zm.3770.2.A1_at	CD437110	hypothetical protein LOC100278844	-	2e-47	At5g07290	AML4 (ARABIDOPSIS MEI2-LIKE 4)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.94	Zm.13545.1.S1_at	CF011295	-	-	6e+0	At4g29150	IQD25 (IQ-domain 25)	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.94	Zm.8081.1.A1_at	CA403539	-	-	3e+0	At2g27710	60S acidic ribosomal protein P2 (RPP2B)	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.94	Zm.40.1.S1_at	BM078677	-	-	9e-5	At3g43600	AAO2 (ALDEHYDE OXIDASE 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.3	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3	91.7	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage