Co-expression analysis

Gene ID	Zm.13728.2.S1_a_at
Gene name	alpha-expansin 4
Homology with Arabidopsis	Similar to At3g55500: ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) (HF=1e-14)
Module size	15 genes
NF	0.36
%ile	37.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.54	69.8	0.94	Zm.13728.2.S1_a_at	AY106266.1	alpha-expansin 4	-	1e-14	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.95	Zm.354.1.S1_at	AY505017.1	glossy1	-	7e-2	At4g19150	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.96	Zm.4527.1.A1_s_at	AI734591	hypothetical protein LOC100272791	-	1e+0	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.97	Zm.6688.1.A1_at	BQ538665	hypothetical protein LOC100275476	-	3e+0	At1g68862	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.96	Zm.2168.1.A1_at	BE638518	-	-	2e+0	At3g46940	deoxyuridine 5'-triphosphate nucleotidohydrolase family	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.96	Zm.16315.1.S1_a_at	AF326488.1	plasma membrane integral protein ZmPIP1-3	-	3e-24	At3g61430	PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.1546.2.S1_x_at	CB411210	hypothetical protein LOC100278775	-	3e-4	At1g15270	-	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.96	Zm.19063.1.S1_at	CO532335	hypothetical protein LOC100274479	-	2e-1	At5g58140	PHOT2 (PHOTOTROPIN 2)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.96	Zm.12532.1.A1_at	AI745991	-	-	1e+0	At4g12850	far-red impaired responsive family protein / FAR1 family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.7607.1.A1_at	BM335952	hypothetical protein LOC100192716	-	6e+0	At5g20910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.96	Zm.10347.1.A1_a_at	AF012888.1	Tousled-like kinase 1	-	3e-52	At5g20930	TSL (TOUSLED)	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.96	Zm.10842.1.S1_a_at	AF493800.1	DRE binding factor 1	-	1e-4	At2g22200	AP2 domain-containing transcription factor	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	Zm.18528.1.A1_at	CF630784	-	-	3e+0	At2g14095	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.96	Zm.2407.1.A1_a_at	BM073394	hypothetical protein LOC100191492	-	6e+0	At5g19370	rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.95	Zm.17952.1.A1_at	CF632730	-	-	6e+0	At4g13150	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	96.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.1	94.3	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.1	94.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage