Co-expression analysis

Gene ID Zm.13717.1.S1_at
Gene name SC3 protein
Homology with ArabidopsisSimilar to At2g20840: secretory carrier membrane protein (SCAMP) family protein (HF=9e-16)
Module size 11 genes
NF 0.15
%ile 10.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8796.40.92Zm.13717.1.S1_atAY106421.1SC3 protein-9e-16At2g20840secretory carrier membrane protein (SCAMP) family proteinO.I.H.G.S.X.
0.3844.20.94Zm.13347.1.S1_a_atCF633171hypothetical protein LOC100191936-6e-1At1g54240DNA bindingO.I.H.G.S.X.
0.2724.60.94Zm.2964.1.S1_s_atAY106674.1hypothetical protein LOC100191774-2e-4At1g06690aldo/keto reductase family proteinO.I.H.G.S.X.
0.2318.60.96Zm.5309.1.A1_a_atAI619196hypothetical protein LOC100192865 /// proteasome subunit beta type 4-7e-10At1g56450PBG1O.I.H.G.S.X.
0.125.90.96Zm.3983.2.A1_atAI820263--8e-1At3g60510enoyl-CoA hydratase/isomerase family proteinO.I.H.G.S.X.
0.115.30.95Zm.11662.1.A1_atBM379784--6e-1At1g50930unknown proteinO.I.H.G.S.X.
0.094.00.94Zm.13714.1.S1_atCF245179hypothetical protein LOC100272524-1e-14At2g01060myb family transcription factorO.I.H.G.S.X.
0.083.40.95Zm.6857.1.S1_atCF046870protein binding protein-1e-8At1g63170zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.083.40.95Zm.6480.2.S1_atAI065715--1e-11At5g64200ATSC35O.I.H.G.S.X.
0.083.40.96Zm.17988.1.A1_atCO520918--6e-10At4g26970aconitate hydratase/ copper ion bindingO.I.H.G.S.X.
0.072.90.95Zm.16860.1.A1_atCF648633--4e-4At1g79750ATNADP-ME4 (NADP-malic enzyme 4)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.698.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.096.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
1.989.6GSM206325Upper pulvinus 5 min polysomal RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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