Co-expression analysis

Gene ID	Zm.13707.1.A1_at
Gene name	rhythmically expressed protein
Homology with Arabidopsis	Similar to At2g41250: haloacid dehalogenase-like hydrolase family protein (HF=2e-14)
Module size	17 genes
NF	0.48
%ile	59.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	91.1	0.96	Zm.13707.1.A1_at	BQ547937	rhythmically expressed protein	-	2e-14	At2g41250	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.72	88.6	0.96	Zm.2489.1.A1_at	CD447064	mitochondrial chaperonin-60	-	8e-82	At3g23990	HSP60 (HEAT SHOCK PROTEIN 60)	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.97	Zm.157.1.S1_at	AY107763.1	catalase2	-	3e-22	At4g35090	CAT2 (CATALASE 2)	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.97			-	-				O.I.	H.G.	S.X.	Please select
0.55	71.6	0.96	Zm.16449.1.A1_at	AY112082.1	-	-	1e+0	At3g29034	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.6927.2.A1_a_at	CF038958	hypothetical protein LOC100194137	-	1e-20	At5g05080	UBC22 (ubiquitin-conjugating enzyme 22)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.97	Zm.14807.1.S1_at	BU050489	Hypothetical protein LOC100192365	-	3e+0	At5g15560	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.97	Zm.16861.2.S1_at	AW498347	L-ascorbate oxidase	-	7e-4	At1g55570	sks12 (SKU5 Similar 12)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.96	Zm.3623.1.S1_at	BG873827	hypothetical protein LOC100216808	-	7e+0	At5g52440	HCF106	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.17572.2.S1_at	CF972387	heat- and acid-stable phosphoprotein	-	3e-8	At5g46020	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.5008.1.A1_at	AY108557.1	hypothetical protein LOC100275589	-	2e-29	At5g54870	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.96	Zm.4977.1.S1_at	AY109232.1	-	-	2e-1	At1g58360	AAP1 (AMINO ACID PERMEASE 1)	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.97	Zm.16988.1.A1_at	L10634.1	beta-7 tubulin	-	4e-117	At5g23860	TUB8	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.4204.1.S1_a_at	AY103547.1	-	-	2e-26	At2g24200	cytosol aminopeptidase	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.4623.1.S1_at	AI372203	Hypothetical protein LOC100217143	-	6e-2	At1g68020	ATTPS6	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.96	Zm.16017.1.A1_at	CF244045	-	-	2e-4	At5g08415	lipoic acid synthase family protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.98	Zm.9984.1.A1_at	CO529085	Hypothetical protein LOC100217031	-	4e-4	At1g65000	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.9	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.4	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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