Co-expression analysis

Gene ID Zm.13658.1.A1_at
Gene name hypothetical protein LOC100193262
Homology with ArabidopsisSimilar to At3g50350: unknown protein (HF=1e+0)
Module size 6 genes
NF 0.56
%ile 74.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.10.99Zm.13658.1.A1_atAY107148.1hypothetical protein LOC100193262-1e+0At3g50350unknown proteinO.I.H.G.S.X.
0.8094.01.00ZmAffx.714.1.S1_atAI739758--1e+1At5g66930unknown proteinO.I.H.G.S.X.
0.7188.21.00Zm.4853.1.S1_atCD439703--2e-1At2g45070SEC61 BETAO.I.H.G.S.X.
0.6179.50.99Zm.13975.1.A1_atCK985455carbonyl reductase 3-6e-1At4g20880ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2)O.I.H.G.S.X.
0.5571.61.00Zm.4194.1.A1_atAI861230hypothetical protein LOC100276018-3e+0At1g711806-phosphogluconate dehydrogenase NAD-binding domain-containing proteinO.I.H.G.S.X.
0.2928.10.99Zm.17816.2.S1_a_atCK144883tRNA pseudouridine synthase family protein-2e-2At1g76120tRNA pseudouridine synthase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.798.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.795.4GSM253272ZM_4.5d_SG200_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.47831.1.S1_at, orthologous to the query gene, Zm.13658.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8793.2GmaAffx.47831.1.S1_atAt3g50350--8e-1At3g14970zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2939.0GmaAffx.82504.1.S1_atAt3g50350--2e-11At1g60600ABC4 (ABERRANT CHLOROPLAST DEVELOPMENT 4)O.I.H.G.S.X.
0.2939.0Gma.13031.2.S1_atAt3g50350--2e-3At1g36390co-chaperone grpE family proteinO.I.H.G.S.X.
0.2735.7Gma.17429.1.S1_atAt3g50350--6e-6At1g28150unknown proteinO.I.H.G.S.X.
0.2735.7GmaAffx.84471.1.S1_atAt3g50350--1e-18At4g31040proton extrusion protein-relatedO.I.H.G.S.X.
0.2633.9GmaAffx.13399.1.S1_atAt3g50350chloroplast pentose phosphate transporter-8e-26At5g17630glucose-6-phosphate/phosphate translocator, putativeO.I.H.G.S.X.
0.2430.9GmaAffx.5882.1.S1_atAt3g50350--5e+0At5g53588CPuORF50 (Conserved peptide upstream open reading frame 50)O.I.H.G.S.X.
0.2430.9GmaAffx.79658.1.S1_atAt3g50350--9e-1At1g06760histone H1, putativeO.I.H.G.S.X.
0.2430.9GmaAffx.14734.1.A1_atAt3g50350--7e-9At1g02475-O.I.H.G.S.X.
0.2329.9GmaAffx.83052.1.S1_atAt3g50350--2e-1At5g48350nucleic acid bindingO.I.H.G.S.X.
0.2329.9GmaAffx.37701.1.S1_atAt3g50350--4e+0At5g65640bHLH093 (beta HLH protein 93)O.I.H.G.S.X.
0.2126.6GmaAffx.15075.1.S1_atAt3g50350--2e-23At1g767305-formyltetrahydrofolate cyclo-ligase family proteinO.I.H.G.S.X.
0.1923.7GmaAffx.17650.1.S1_atAt3g50350homogentisate phytyltransferase VTE2-2-3e-44At3g11945homogentisate farnesyltransferase/ homogentisate geranylgeranyltransferase/ homogentisate solanesyltransferaseO.I.H.G.S.X.
0.1923.7GmaAffx.28909.1.S1_atAt3g50350--2e-24At2g23840HNH endonuclease domain-containing proteinO.I.H.G.S.X.
0.1822.3Gma.12855.1.S1_atAt3g50350--9e-20At5g14460pseudouridine synthase/ transporterO.I.H.G.S.X.
0.1721.2Gma.15790.1.S1_atAt3g50350--5e-6At5g13410immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinO.I.H.G.S.X.
0.1721.2Gma.13031.1.A1_atAt3g50350--1e+0At2g30115-O.I.H.G.S.X.
0.1721.2Gma.1205.2.S1_a_atAt3g50350--5e-32At2g04842EMB2761 (EMBRYO DEFECTIVE 2761)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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