Co-expression analysis

Gene ID	Zm.13616.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g25315: Expressed protein (HF=2e+0)
Module size	9 genes
NF	0.66
%ile	88.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	87.0	1.00	Zm.13616.1.S1_at	AY107497.1	-	-	2e+0	At4g25315	Expressed protein	O.I.	H.G.	S.X.	Please select
0.75	90.8	1.00	Zm.2805.1.A1_at	AW352682	hypothetical protein LOC100274443	-	5e+0	At4g13266	unknown protein	O.I.	H.G.	S.X.	Please select
0.74	90.3	1.00	Zm.18157.1.A1_at	CO533028	-	-	2e-1	At4g20290	unknown protein	O.I.	H.G.	S.X.	Please select
0.74	90.3	1.00	ZmAffx.105.1.S1_at	AI665537	-	-	3e+0	At4g20000	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	1.00	Zm.11787.1.A1_a_at	BM380772	-	-	6e+0	At5g17523	-	O.I.	H.G.	S.X.	Please select
0.63	81.1	1.00	ZmAffx.901.1.A1_at	AI770894	-	-	1e+1	At5g47455	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	1.00	Zm.5813.1.A1_at	CF056763	hypothetical protein LOC100191474	-	8e-32	At5g55310	TOP1BETA (DNA TOPOISOMERASE 1 BETA)	O.I.	H.G.	S.X.	Please select
0.53	69.1	1.00	ZmAffx.89.1.A1_at	AI665353	hypothetical protein LOC100277768	-	1e+1	At5g20560	beta-1,3-glucanase, putative	O.I.	H.G.	S.X.	Please select
0.33	36.0	1.00	Zm.15937.1.A1_at	CO520791	-	-	5e+0	At3g25200	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.7	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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