Co-expression analysis

Gene ID Zm.1360.1.S1_x_at
Gene name hypothetical protein LOC100276510
Homology with ArabidopsisSimilar to At4g27890: nuclear movement family protein (HF=6e-1)
Module size 6 genes
NF 0.41
%ile 46.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.98Zm.1360.1.S1_x_atAW927383hypothetical protein LOC100276510-6e-1At4g27890nuclear movement family proteinO.I.H.G.S.X.
0.5065.70.98Zm.5064.1.S1_atCA399210--2e-24At1g29880glycyl-tRNA synthetase / glycine--tRNA ligaseO.I.H.G.S.X.
0.3641.30.98Zm.2034.1.S1_atBE123271hypothetical protein LOC100277458-1e+0At1g18800NRP2 (NAP1-RELATED PROTEIN 2)O.I.H.G.S.X.
0.3029.80.98Zm.39.1.S1_atD87042.1Calcium-dependent protein kinase-1e-25At4g35310CPK5 (calmodulin-domain protein kinase 5)O.I.H.G.S.X.
0.2724.60.98ZmAffx.963.1.A1_atAI833792--8e-1At4g04620ATG8B (autophagy 8b)O.I.H.G.S.X.
0.2419.80.99Zm.13196.1.S1_atAY105985.1t-snare-6e-2At5g59210myosin heavy chain-relatedO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.80.97Zm.16779.3.S1_atAI691600hypothetical protein LOC100273958-7e-6At5g48810CB5-D (CYTOCHROME B5 ISOFORM D)O.I.H.G.S.X.
0.5775.10.98ZmAffx.281.1.S1_atAI670409--3e+0At5g46795MSP2 (microspore-specific promoter 2)O.I.H.G.S.X.
0.5674.40.97Zm.16356.1.A2_atCF006790--8e-17At4g24920protein transport protein SEC61 gamma subunit, putativeO.I.H.G.S.X.
0.5065.70.96ZmAffx.775.1.A1_atAI746211S-ribonuclease binding protein SBP1-8e-1At4g32480unknown proteinO.I.H.G.S.X.
0.5065.70.98Zm.4640.1.A1_atCF623843KH domain containing protein-3e+0At2g31085CLE6 (CLAVATA3/ESR-RELATED 6)O.I.H.G.S.X.
0.4455.70.97ZmAffx.1220.1.S1_at11990232-112--3e+0At4g36910LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)O.I.H.G.S.X.
0.4251.30.97Zm.17198.1.A1_atAY108769.1BSD domain containing protein-1e-2At3g49800BSD domain-containing proteinO.I.H.G.S.X.
0.4048.50.96Zm.15278.1.S1_atBM380074hypothetical protein LOC100278126-1e+1At4g16380metal ion bindingO.I.H.G.S.X.
0.3844.20.97ZmAffx.72.1.A1_atAI665181--2e-1At4g39580kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.3844.20.98ZmAffx.1398.1.S1_at40794996-73--2e-1At2g15500-O.I.H.G.S.X.
0.3844.20.98Zm.3930.1.S1_s_atBQ538158AMP-binding protein-8e-37At3g05970LACS6 (long-chain acyl-CoA synthetase 6)O.I.H.G.S.X.
0.3641.30.97ZmAffx.482.1.S1_atAI691285--3e+0At5g57510unknown proteinO.I.H.G.S.X.
0.3641.30.97ZmAffx.528.1.S1_atAI711688--2e-1At1g80420DNA repair protein, putative (XRCC1)O.I.H.G.S.X.
0.3538.90.97Zm.9425.1.A1_a_atBM268756hypothetical protein LOC100274829-2e+1At5g23440FTRA1 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 1)O.I.H.G.S.X.
0.3538.90.98ZmAffx.816.1.A1_atAI770437--3e+0At3g12977DNA bindingO.I.H.G.S.X.
0.3538.90.98Zm.5077.1.A1_s_atAY106102.1hypothetical protein LOC100217191-5e-2At3g28070nodulin MtN21 family proteinO.I.H.G.S.X.
0.3336.00.96ZmAffx.1131.1.S1_atAW330850--2e-1At3g59260pirin, putativeO.I.H.G.S.X.
0.3336.00.96Zm.18268.1.S1_atAY111026.1Hypothetical LOC542182-2e-8At5g45290zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3336.00.97Zm.3752.1.S1_atBM336170pyridoxal kinase-2e-14At5g37850SOS4 (SALT OVERLY SENSITIVE 4)O.I.H.G.S.X.
0.3336.00.98Zm.206.3.S1_a_atY09636.140S ribosomal subunit protein S21-5e-12At3g5389040S ribosomal protein S21 (RPS21B)O.I.H.G.S.X.
0.3336.00.98Zm.5932.1.S1_atAB071695.1response regulator 10-3e-1At2g01760ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14)O.I.H.G.S.X.
0.3336.00.98Zm.4471.5.A1_atBF729171protein kinase APK1B-2e-2At3g47510unknown proteinO.I.H.G.S.X.
0.3131.60.97ZmAffx.406.12.S1_atAI670232--1e+1At5g53030unknown proteinO.I.H.G.S.X.
0.3131.60.98Zm.4774.1.A1_atCF637265hypothetical protein LOC100191958-1e+0At3g26360unknown proteinO.I.H.G.S.X.
0.3029.80.96Zm.18031.2.S1_atAI668378--3e+0At4g14210PDS3 (PHYTOENE DESATURASE 3)O.I.H.G.S.X.
0.2928.10.96Zm.10183.1.A1_atCD439994hypothetical protein LOC100279232-2e+0At4g35480RHA3BO.I.H.G.S.X.
0.2928.10.96ZmAffx.1199.2.A1_atAI691435--1e-8At3g48610phosphoesterase family proteinO.I.H.G.S.X.
0.2928.10.97Zm.15129.1.A1_atBM079118--6e-2At4g33905peroxisomal membrane protein 22 kDa, putativeO.I.H.G.S.X.
0.2928.10.98Zm.17512.1.S1_atCF057479hypothetical protein LOC100192897-2e-9At4g25590ADF7 (actin depolymerizing factor 7)O.I.H.G.S.X.
0.2724.60.96Zm.10265.1.A1_atBM660318hypothetical protein LOC100279289-2e-4At3g02090mitochondrial processing peptidase beta subunit, putativeO.I.H.G.S.X.
0.2724.60.97Zm.11136.1.A1_atCK370100hypothetical protein LOC100277998-1e-1At4g39710immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putativeO.I.H.G.S.X.
0.2724.60.98Zm.14012.1.S1_atAY108370.1hypothetical protein LOC100276126-9e-2At4g35750Rho-GTPase-activating protein-relatedO.I.H.G.S.X.
0.2521.30.96Zm.8626.1.A1_atBM348921hypothetical protein LOC100274398-1e+0At5g61600ethylene-responsive element-binding family proteinO.I.H.G.S.X.
0.2521.30.99Zm.12312.1.S1_atCD441645hypothetical protein LOC100216941-1e-21At1g60940SNRK2.10 (SNF1-RELATED PROTEIN KINASE 2.10)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.597.8GSM258201Wf9 11-day seedling aerial tissue biological replicate 1GSE10237Gene expression variation among eight maize inbredsLink to GEO
6.497.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM258207Wf9 11-day seedling aerial tissue biological replicate 3GSE10237Gene expression variation among eight maize inbredsLink to GEO
5.797.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.597.1GSM258204Wf9 11-day seedling aerial tissue biological replicate 2GSE10237Gene expression variation among eight maize inbredsLink to GEO
4.896.6GSM258172B37 11-day seedling aerial tissue biological replicate 1GSE10236Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosisLink to GEO
4.195.9GSM258181B37 11-day seedling aerial tissue biological replicate 2GSE10236Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosisLink to GEO
4.095.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.895.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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