Co-expression analysis

Gene ID	Zm.1360.1.S1_x_at
Gene name	hypothetical protein LOC100276510
Homology with Arabidopsis	Similar to At4g27890: nuclear movement family protein (HF=6e-1)
Module size	6 genes
NF	0.41
%ile	46.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.1360.1.S1_x_at	AW927383	hypothetical protein LOC100276510	-	6e-1	At4g27890	nuclear movement family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.5064.1.S1_at	CA399210	-	-	2e-24	At1g29880	glycyl-tRNA synthetase / glycine--tRNA ligase	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.98	Zm.2034.1.S1_at	BE123271	hypothetical protein LOC100277458	-	1e+0	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.98	Zm.39.1.S1_at	D87042.1	Calcium-dependent protein kinase	-	1e-25	At4g35310	CPK5 (calmodulin-domain protein kinase 5)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.98	ZmAffx.963.1.A1_at	AI833792	-	-	8e-1	At4g04620	ATG8B (autophagy 8b)	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.99	Zm.13196.1.S1_at	AY105985.1	t-snare	-	6e-2	At5g59210	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	97.8	GSM258201	Wf9 11-day seedling aerial tissue biological replicate 1	GSE10237	Gene expression variation among eight maize inbreds
6.4	97.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM258207	Wf9 11-day seedling aerial tissue biological replicate 3	GSE10237	Gene expression variation among eight maize inbreds
5.7	97.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM258204	Wf9 11-day seedling aerial tissue biological replicate 2	GSE10237	Gene expression variation among eight maize inbreds
4.8	96.6	GSM258172	B37 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
4.1	95.9	GSM258181	B37 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
4.0	95.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, Contig24755_at, orthologous to the query gene, Zm.1360.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	95.2	Contig24755_at	At4g27890	-	-	2e-6	At4g33060	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig9780_at	At4g27890	-	-	8e-8	At5g11040	-	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig8007_at	At4g27890	-	-	8e-1	At2g38610	KH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig16455_at	At4g27890	-	-	1e-1	At3g46880	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig19558_at	At4g27890	-	-	4e-1	At5g42520	ATBPC6	O.I.	H.G.	S.X.	Please select
0.17	16.9	HVSMEm0009E22r2_x_at	At4g27890	-	-	5e+0	At5g13720	-	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig8972_at	At4g27890	-	-	8e-10	At3g47930	ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE)	O.I.	H.G.	S.X.	Please select
0.11	9.4	Contig18744_at	At4g27890	-	-	2e+0	At5g41630	F-box family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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