Co-expression analysis

Gene ID	Zm.1360.1.S1_x_at
Gene name	hypothetical protein LOC100276510
Homology with Arabidopsis	Similar to At4g27890: nuclear movement family protein (HF=6e-1)
Module size	6 genes
NF	0.41
%ile	46.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.1360.1.S1_x_at	AW927383	hypothetical protein LOC100276510	-	6e-1	At4g27890	nuclear movement family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.5064.1.S1_at	CA399210	-	-	2e-24	At1g29880	glycyl-tRNA synthetase / glycine--tRNA ligase	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.98	Zm.2034.1.S1_at	BE123271	hypothetical protein LOC100277458	-	1e+0	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.98	Zm.39.1.S1_at	D87042.1	Calcium-dependent protein kinase	-	1e-25	At4g35310	CPK5 (calmodulin-domain protein kinase 5)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.98	ZmAffx.963.1.A1_at	AI833792	-	-	8e-1	At4g04620	ATG8B (autophagy 8b)	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.99	Zm.13196.1.S1_at	AY105985.1	t-snare	-	6e-2	At5g59210	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	97.8	GSM258201	Wf9 11-day seedling aerial tissue biological replicate 1	GSE10237	Gene expression variation among eight maize inbreds
6.4	97.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM258207	Wf9 11-day seedling aerial tissue biological replicate 3	GSE10237	Gene expression variation among eight maize inbreds
5.7	97.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM258204	Wf9 11-day seedling aerial tissue biological replicate 2	GSE10237	Gene expression variation among eight maize inbreds
4.8	96.6	GSM258172	B37 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
4.1	95.9	GSM258181	B37 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
4.0	95.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage