Co-expression analysis

Gene ID Zm.1359.1.S1_at
Gene name male gametophyte-specific2
Homology with ArabidopsisSimilar to At3g01270: pectate lyase family protein (HF=3e-6)
Module size 6 genes
NF 0.51
%ile 65.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7188.20.97Zm.1359.1.S1_atL20139.1male gametophyte-specific2-3e-6At3g01270pectate lyase family proteinO.I.H.G.S.X.
0.7188.20.97Zm.8551.1.A1_atBM333970--2e+0At5g5729060S acidic ribosomal protein P3 (RPP3B)O.I.H.G.S.X.
0.5674.40.97Zm.16049.2.A1_atCF042888--3e-4At5g0385040S ribosomal protein S28 (RPS28B)O.I.H.G.S.X.
0.4861.30.97Zm.7976.1.S1_atBM080696hypothetical protein LOC100217261-2e-46At5g37680ATARLA1A (ADP-ribosylation factor-like A1A)O.I.H.G.S.X.
0.4048.50.97Zm.17581.1.S1_atCK371654hypothetical protein LOC100216838-2e+0At1g68540oxidoreductase family proteinO.I.H.G.S.X.
0.2928.10.97Zm.5960.1.A1_atAI665953hypothetical protein LOC100277799-1e+1At5g65158-O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8696.30.96Zm.811.1.A1_atCA405132cathepsin B-like cysteine proteinase 3-2e-23At1g02305cathepsin B-like cysteine protease, putativeO.I.H.G.S.X.
0.6785.80.97Zm.15902.1.A1_atCA403079hypothetical protein LOC100280345-2e+0At5g64650ribosomal protein L17 family proteinO.I.H.G.S.X.
0.6381.10.94Zm.2781.1.S1_atCF007960--5e+0At4g35480RHA3BO.I.H.G.S.X.
0.5674.40.96Zm.2961.3.S1_atAW119963--2e+0At5g25570unknown proteinO.I.H.G.S.X.
0.5571.60.94ZmAffx.905.1.S1_atAI770915--1e-11At2g20300ALE2 (Abnormal Leaf Shape 2)O.I.H.G.S.X.
0.5369.10.96Zm.17222.1.A1_atCK144311--2e-13At3g62980TIR1 (TRANSPORT INHIBITOR RESPONSE 1)O.I.H.G.S.X.
0.5065.70.96Zm.9676.1.A1_atBM338827--3e-1At5g22710-O.I.H.G.S.X.
0.5065.70.97Zm.17659.1.A1_atCF629386acyl-CoA-binding protein-7e-17At1g31812ACBP6 (acyl-CoA-binding protein 6)O.I.H.G.S.X.
0.4455.70.96Zm.12293.1.S1_atCN844282hypothetical protein LOC100272936-2e-1At3g17160unknown proteinO.I.H.G.S.X.
0.4352.80.97Zm.8301.1.A1_atBM379812hypothetical protein LOC100278224-1e+0At4g21780unknown proteinO.I.H.G.S.X.
0.4048.50.93Zm.4982.1.A1_atCO531401ubiquitin-conjugating enzyme E2-22 kDa-3e-5At5g50870UBC27 (ubiquitin-conjugating enzyme 27)O.I.H.G.S.X.
0.4048.50.94Zm.10645.1.S1_atBQ538784--3e+0At5g40700unknown proteinO.I.H.G.S.X.
0.4048.50.95Zm.8081.1.A1_atCA403539--3e+0At2g2771060S acidic ribosomal protein P2 (RPP2B)O.I.H.G.S.X.
0.4048.50.96Zm.587.1.A1_atAF243043.1DNA cytosine methyltransferase MET2a-4e-1At1g69770CMT3 (chromomethylase 3)O.I.H.G.S.X.
0.4048.50.96Zm.1194.1.S1_atCA403262fasciclin-like arabinogalactan protein 10-2e-1At5g52930unknown proteinO.I.H.G.S.X.
0.4048.50.96Zm.5412.1.A1_atCF635537hypothetical protein LOC100280167-3e-6At4g02630protein kinase family proteinO.I.H.G.S.X.
0.4048.50.96ZmAffx.185.1.S1_atAI668356--1e+1At5g58220TTL (Transthyretin-Like protein)O.I.H.G.S.X.
0.4048.50.97Zm.7607.1.A1_atBM335952hypothetical protein LOC100192716-6e+0At5g20910zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3844.20.96Zm.16315.1.S1_a_atAF326488.1plasma membrane integral protein ZmPIP1-3-3e-24At3g61430PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A)O.I.H.G.S.X.
0.3641.30.95Zm.16426.1.S1_atAW282342hypothetical protein LOC100216715-3e-23At1g15110phosphatidyl serine synthase family proteinO.I.H.G.S.X.
0.3641.30.96Zm.13661.1.S1_atBG836258--2e+0At4g25710kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.3641.30.96Zm.8122.1.A1_atBM736458hypothetical protein LOC100274535-4e-73At2g44610RAB6AO.I.H.G.S.X.
0.3538.90.95ZmAffx.907.1.A1_atAI770929--1e+1At5g37780CAM1 (CALMODULIN 1)O.I.H.G.S.X.
0.3538.90.96Zm.8119.1.S1_atAY110313.1--8e-5At1g03650GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.
0.3437.20.92Zm.774.1.S1_atCF625446hypothetical protein LOC100191508-2e-17At4g14160transport protein, putativeO.I.H.G.S.X.
0.3336.00.96Zm.6432.1.A1_a_atBQ538326hypothetical protein LOC100191156-7e-10At5g64200ATSC35O.I.H.G.S.X.
0.3336.00.96Zm.12150.1.S1_atAY106576.160S ribosomal protein L30-7e-15At1g3624060S ribosomal protein L30 (RPL30A)O.I.H.G.S.X.
0.3336.00.96Zm.15684.1.S1_atCD441261hypothetical protein LOC100280328-5e-27At1g65410ATNAP11 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11)O.I.H.G.S.X.
0.3336.00.97Zm.13409.1.A1_atAF457934.1--6e-2At1g62640KAS III (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III)O.I.H.G.S.X.
0.3336.00.97Zm.3418.1.A1_atCF624427--2e+0At4g33465SCRL22 (SCR-Like 22)O.I.H.G.S.X.
0.3233.40.95Zm.869.2.S1_atAI711751Hypothetical protein LOC100192365-6e+0At5g15560unknown proteinO.I.H.G.S.X.
0.3131.60.95Zm.14951.1.S1_x_atM36914.1cell wall protein (put.); putative-5e-3At2g30370allergen-relatedO.I.H.G.S.X.
0.3131.60.97Zm.3289.1.A1_atAI979535--2e+0At3g16240DELTA-TIPO.I.H.G.S.X.
0.2928.10.93Zm.5787.2.S1_atAY107157.1hypothetical protein LOC100273050-4e-1At5g48790unknown proteinO.I.H.G.S.X.
0.2928.10.94Zm.18873.2.A1_atAI670642--1e+0At5g08150unknown proteinO.I.H.G.S.X.
0.2928.10.94Zm.18049.1.A1_atCF628818pathogenesis-related protein PR-1-7e-6At4g25790allergen V5/Tpx-1-related family proteinO.I.H.G.S.X.
0.2928.10.95Zm.18241.1.S1_atAI738184PP protein-7e-29At4g31750WIN2 (HOPW1-1-INTERACTING 2)O.I.H.G.S.X.
0.2928.10.96Zm.9839.1.A1_atBM339393Hypothetical protein LOC100193033-3e+0At2g17300unknown proteinO.I.H.G.S.X.
0.2828.10.95Zm.13611.1.S1_atAW171965--6e-23At5g13520peptidase M1 family proteinO.I.H.G.S.X.
0.2724.60.96Zm.6485.1.A1_atCB617134growth-regulating factor 2-like-9e-9At2g22840AtGRF1 (GROWTH-REGULATING FACTOR 1)O.I.H.G.S.X.
0.2724.60.94Zm.6375.1.A1_atAI691611--3e-5At2g33730DEAD box RNA helicase, putativeO.I.H.G.S.X.
0.2724.60.95Zm.5985.2.S1_atAY104529.1Hypothetical protein LOC100217272-2e-34At3g51270ATP binding / catalytic/ protein serine/threonine kinaseO.I.H.G.S.X.
0.2724.60.95Zm.8285.1.S1_atCA826983hypothetical protein LOC100276185-6e-3At4g10810unknown proteinO.I.H.G.S.X.
0.2724.60.96Zm.10472.1.S1_atBQ538648hypothetical protein LOC100216888-3e-12At1g80780CCR4-NOT transcription complex protein, putativeO.I.H.G.S.X.
0.2724.60.96Zm.2270.1.S1_atBF733079ATP-dependent Clp protease adaptor protein ClpS containing protein-4e-1At1g68660-O.I.H.G.S.X.
0.2724.60.96Zm.5292.1.A1_a_atBM074771--2e-7At5g23750remorin family proteinO.I.H.G.S.X.
0.2724.60.96Zm.2559.1.A1_atBE639404NEDD8-activating enzyme E1 catalytic subunit-7e+0At3g28193unknown proteinO.I.H.G.S.X.
0.2622.70.94Zm.7489.1.A1_atBM078668hypothetical protein LOC100193199-4e-1At3g28980unknown proteinO.I.H.G.S.X.
0.2521.30.94Zm.8866.1.A1_atBM348347expansin-like 3-1e-2At4g38400ATEXLA2 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A2)O.I.H.G.S.X.
0.2521.30.96Zm.16805.2.A1_atCF635679hypothetical protein LOC100216623-1e-106At2g47170ARF1A1CO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.599.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.598.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.898.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.398.7GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.898.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.798.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.098.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320470protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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