Co-expression analysis

Gene ID	Zm.1359.1.S1_at
Gene name	male gametophyte-specific2
Homology with Arabidopsis	Similar to At3g01270: pectate lyase family protein (HF=3e-6)
Module size	6 genes
NF	0.51
%ile	65.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	0.97	Zm.1359.1.S1_at	L20139.1	male gametophyte-specific2	-	3e-6	At3g01270	pectate lyase family protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.97	Zm.8551.1.A1_at	BM333970	-	-	2e+0	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.97	Zm.16049.2.A1_at	CF042888	-	-	3e-4	At5g03850	40S ribosomal protein S28 (RPS28B)	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	Zm.7976.1.S1_at	BM080696	hypothetical protein LOC100217261	-	2e-46	At5g37680	ATARLA1A (ADP-ribosylation factor-like A1A)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.17581.1.S1_at	CK371654	hypothetical protein LOC100216838	-	2e+0	At1g68540	oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.5960.1.A1_at	AI665953	hypothetical protein LOC100277799	-	1e+1	At5g65158	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.5	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320470	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, Ta.25997.1.A1_at, orthologous to the query gene, Zm.1359.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	Ta.25997.1.A1_at	At3g01270	-	-	5e-1	At3g01270	pectate lyase family protein	O.I.	H.G.	S.X.	Please select
0.83	93.4	TaAffx.25058.1.A1_at	At3g01270	-	-	5e+0	At4g09030	AGP10 (ARABINOGALACTAN PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.10295.1.S1_at	At3g01270	-	-	2e+0	At2g21640	-	O.I.	H.G.	S.X.	Please select
0.60	81.0	Ta.10295.1.S1_x_at	At3g01270	-	-	2e+0	At2g21640	-	O.I.	H.G.	S.X.	Please select
0.44	64.5	TaAffx.92790.1.S1_at	At3g01270	-	-	1e-7	At1g04760	ATVAMP726	O.I.	H.G.	S.X.	Please select
0.08	9.4	TaAffx.12182.1.S1_at	At3g01270	-	-	2e+0	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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