Co-expression analysis

Gene ID Zm.13584.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g21640: NADK2 (HF=1e-72)
Module size 6 genes
NF 0.16
%ile 10.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5674.40.90Zm.13584.1.A1_atAY107853.1--1e-72At1g21640NADK2O.I.H.G.S.X.
0.2622.70.89Zm.3134.2.A1_atAI770607--8e-1At3g23000CIPK7 (CBL-INTERACTING PROTEIN KINASE 7)O.I.H.G.S.X.
0.2216.90.92Zm.7370.1.A1_atBM382341beta-expansin 1a-5e-1At1g20220nucleic acid bindingO.I.H.G.S.X.
0.115.30.92Zm.8456.1.A1_atBM335025hypothetical protein LOC100273451-5e+0At5g14020-O.I.H.G.S.X.
0.072.90.91Zm.11871.1.A1_atBM381412--1e+0At5g55140ribosomal protein L30 family proteinO.I.H.G.S.X.
0.062.30.91Zm.17352.1.A1_atCF636500--4e+0At5g53030unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4658.40.88Zm.12544.1.A1_atAI621829hypothetical protein LOC100278145-5e-1At1g08430ALMT1 (ALUMINUM-ACTIVATED MALATE TRANSPORTER 1)O.I.H.G.S.X.
0.3131.60.89Zm.17327.2.S1_a_atCF628822--1e+0At3g04640glycine-rich proteinO.I.H.G.S.X.
0.3131.60.91Zm.18320.1.A1_atCF634297--1e-12At4g27650PEL1 (PELOTA)O.I.H.G.S.X.
0.2928.10.88Zm.1756.1.S1_a_atAF271237.1casein kinase II alpha subunit-3e-123At5g67380CKA1 (CASEIN KINASE ALPHA 1)O.I.H.G.S.X.
0.2928.10.89Zm.11830.1.S1_atCA398394protein grpE-2e-3At5g17710EMB1241 (embryo defective 1241)O.I.H.G.S.X.
0.2115.50.89ZmAffx.1125.1.S1_atAW288880--3e+0At5g57520ZFP2 (ZINC FINGER PROTEIN 2)O.I.H.G.S.X.
0.2115.50.85Zm.10193.1.S1_atBE519382--4e+0At4g36460unknown proteinO.I.H.G.S.X.
0.1710.60.88Zm.9528.1.A1_atCK828051hypothetical protein LOC100193228-1e+0At1g29600zinc finger (CCCH-type) family proteinO.I.H.G.S.X.
0.1710.60.90Zm.9605.1.A1_atBM341116--1e+0At1g15840unknown proteinO.I.H.G.S.X.
0.158.60.87Zm.3138.1.A1_atAI621861--3e+0At3g15360TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.898.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.598.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.398.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.997.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.795.4GSM320438protocol: mRNA - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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