Co-expression analysis

Gene ID	Zm.13584.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g21640: NADK2 (HF=1e-72)
Module size	6 genes
NF	0.16
%ile	10.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.4	0.90	Zm.13584.1.A1_at	AY107853.1	-	-	1e-72	At1g21640	NADK2	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.89	Zm.3134.2.A1_at	AI770607	-	-	8e-1	At3g23000	CIPK7 (CBL-INTERACTING PROTEIN KINASE 7)	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.92	Zm.7370.1.A1_at	BM382341	beta-expansin 1a	-	5e-1	At1g20220	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.92	Zm.8456.1.A1_at	BM335025	hypothetical protein LOC100273451	-	5e+0	At5g14020	-	O.I.	H.G.	S.X.	Please select
0.07	2.9	0.91	Zm.11871.1.A1_at	BM381412	-	-	1e+0	At5g55140	ribosomal protein L30 family protein	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.91	Zm.17352.1.A1_at	CF636500	-	-	4e+0	At5g53030	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.8	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1613485_at, orthologous to the query gene, Zm.13584.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.34	46.8	1613485_at	At1g21640	-	-	3e-84	At1g21640	NADK2	O.I.	H.G.	S.X.	Please select
0.50	72.7	1618777_at	At1g21640	hypothetical protein LOC100241782	-	5e-25	At5g53970	aminotransferase, putative	O.I.	H.G.	S.X.	Please select
0.22	25.6	1616186_at	At1g21640	hypothetical protein LOC100257260	-	2e-14	At4g27390	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	1617236_at	At1g21640	hypothetical protein LOC100243255	-	7e-40	At1g79510	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	1620098_at	At1g21640	-	-	8e-1	At4g33110	coclaurine N-methyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.03	4.2	1617886_at	At1g21640	hypothetical protein LOC100254626	-	1e-20	At4g36480	ATLCB1 (LONG-CHAIN BASE1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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