Co-expression analysis

Gene ID	Zm.13584.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g21640: NADK2 (HF=1e-72)
Module size	6 genes
NF	0.16
%ile	10.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.4	0.90	Zm.13584.1.A1_at	AY107853.1	-	-	1e-72	At1g21640	NADK2	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.89	Zm.3134.2.A1_at	AI770607	-	-	8e-1	At3g23000	CIPK7 (CBL-INTERACTING PROTEIN KINASE 7)	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.92	Zm.7370.1.A1_at	BM382341	beta-expansin 1a	-	5e-1	At1g20220	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.92	Zm.8456.1.A1_at	BM335025	hypothetical protein LOC100273451	-	5e+0	At5g14020	-	O.I.	H.G.	S.X.	Please select
0.07	2.9	0.91	Zm.11871.1.A1_at	BM381412	-	-	1e+0	At5g55140	ribosomal protein L30 family protein	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.91	Zm.17352.1.A1_at	CF636500	-	-	4e+0	At5g53030	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.8	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.133606.1.A1_at, orthologous to the query gene, Zm.13584.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	TaAffx.133606.1.A1_at	At1g21640	-	-	2e+1	At5g05650	-	O.I.	H.G.	S.X.	Please select
0.71	88.0	Ta.17695.1.A1_at	At1g21640	-	-	2e+1	At3g59400	GUN4	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.8854.1.A1_at	At1g21640	-	-	1e-1	At2g37580	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.4912.1.S1_at	At1g21640	-	-	7e-1	At1g28640	GDSL-motif lipase, putative	O.I.	H.G.	S.X.	Please select
0.15	17.1	Ta.8130.1.S1_at	At1g21640	-	-	5e-1	At2g26570	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.2984.1.S1_at	At1g21640	-	-	5e+0	At3g44805	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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