CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.13584.1.A1_at

Gene name
Homology with Arabidopsis Similar to At1g21640: NADK2 (HF=1e-72)

Module size 6 genes

NF 0.16

%ile 10.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 74.4 0.90 Zm.13584.1.A1_at AY107853.1 - - 1e-72 At1g21640 NADK2 O.I. H.G. S.X.
0.26 22.7 0.89 Zm.3134.2.A1_at AI770607 - - 8e-1 At3g23000 CIPK7 (CBL-INTERACTING PROTEIN KINASE 7) O.I. H.G. S.X.
0.22 16.9 0.92 Zm.7370.1.A1_at BM382341 beta-expansin 1a - 5e-1 At1g20220 nucleic acid binding O.I. H.G. S.X.
0.11 5.3 0.92 Zm.8456.1.A1_at BM335025 hypothetical protein LOC100273451 - 5e+0 At5g14020 - O.I. H.G. S.X.
0.07 2.9 0.91 Zm.11871.1.A1_at BM381412 - - 1e+0 At5g55140 ribosomal protein L30 family protein O.I. H.G. S.X.
0.06 2.3 0.91 Zm.17352.1.A1_at CF636500 - - 4e+0 At5g53030 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.8 98.6 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9 98.5 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8 98.5 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5 98.4 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3 98.4 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3 98.2 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9 97.7 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4 97.5 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1 97.4 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7 95.4 GSM320438 protocol: mRNA - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the rice gene, Os11g0191400, orthologous to the query gene, Zm.13584.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.76 92.2 Os11g0191400 At1g21640 - ATP-NAD/AcoX kinase family protein 7e-43 At1g21640 NADK2 O.I. H.G. S.X.
0.67 87.2 Os01g0830000 At1g21640 - SufB 7e-5 At4g04770 ATABC1 (ATP BINDING CASSETTE PROTEIN 1) O.I. H.G. S.X.
0.61 81.2 Os02g0603800 At1g21640 - Isoprenoid biosynthesis-like protein (Fragment) 6e-86 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) O.I. H.G. S.X.
0.60 79.7 Os03g0198300 At1g21640 - Heat shock protein DnaJ, N-terminal domaincontaining protein 5e-3 At1g21660 heat shock protein binding O.I. H.G. S.X.
0.59 78.0 Os06g0724400 At1g21640 - DNL zinc finger domain containing protein 2e+0 At5g27280 zinc finger (DNL type) family protein O.I. H.G. S.X.
0.57 77.0 Os03g0583800 At1g21640 - Mpv17/PMP22 family protein 1e-8 At1g52870 peroxisomal membrane protein-related O.I. H.G. S.X.
0.56 76.3 Os03g0731900 At1g21640 - Isopentenyl/dimethylallyl diphosphate synthase(Fragment) 8e-23 At4g34350 HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE) O.I. H.G. S.X.
0.50 68.0 Os09g0133600 At1g21640 - Fibrillin-like protein 1e-4 At4g04020 FIB (FIBRILLIN) O.I. H.G. S.X.
0.48 63.7 Os03g0805600 At1g21640 - Rieske [2Fe-2S] region domain containing protein 1e-6 At4g25650 ACD1-LIKE (ACD1-LIKE) O.I. H.G. S.X.
0.47 62.3 Os05g0549100 At1g21640 - Casein kinase II, alpha' chain (CK II) (EC2.7.1.37) 1e-27 At1g68830 STN7 (Stt7 homolog STN7) O.I. H.G. S.X.
0.45 58.8 Os03g0711100 At1g21640 - CONSTANS-like protein 1e+0 At4g25990 CIL O.I. H.G. S.X.
0.39 48.3 Os07g0626400 At1g21640 - Heat shock protein DnaJ, N-terminal domaincontaining protein 3e-21 At1g77930 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.30 32.7 Os09g0296800 At1g21640 - Chlorophyll A-B binding protein family protein 2e-1 At5g54270 LHCB3 (LIGHT-HARVESTING CHLOROPHYLL B-BINDING PROTEIN 3) O.I. H.G. S.X.
0.30 32.7 Os02g0649700 At1g21640 - Peptidase M41, FtsH extracellular domaincontaining protein 6e-34 At3g47060 ftsh7 (FtsH protease 7) O.I. H.G. S.X.
0.25 24.1 Os02g0707100 At1g21640 - Monodehydroascorbate reductase, seedling isozyme(EC 1.6.5.4) (MDAR seedling) (Ascorbate free radicalreductase seedling) (AFR reductase seedling) 6e-5 At3g27820 MDAR4 (MONODEHYDROASCORBATE REDUCTASE 4) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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