Co-expression analysis

Gene ID Zm.13584.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g21640: NADK2 (HF=1e-72)
Module size 6 genes
NF 0.16
%ile 10.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5674.40.90Zm.13584.1.A1_atAY107853.1--1e-72At1g21640NADK2O.I.H.G.S.X.
0.2622.70.89Zm.3134.2.A1_atAI770607--8e-1At3g23000CIPK7 (CBL-INTERACTING PROTEIN KINASE 7)O.I.H.G.S.X.
0.2216.90.92Zm.7370.1.A1_atBM382341beta-expansin 1a-5e-1At1g20220nucleic acid bindingO.I.H.G.S.X.
0.115.30.92Zm.8456.1.A1_atBM335025hypothetical protein LOC100273451-5e+0At5g14020-O.I.H.G.S.X.
0.072.90.91Zm.11871.1.A1_atBM381412--1e+0At5g55140ribosomal protein L30 family proteinO.I.H.G.S.X.
0.062.30.91Zm.17352.1.A1_atCF636500--4e+0At5g53030unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.898.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.598.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.398.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.997.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.795.4GSM320438protocol: mRNA - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.11881.1.S1_at, orthologous to the query gene, Zm.13584.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7790.3GmaAffx.11881.1.S1_atAt1g21640--9e-102At1g21640NADK2O.I.H.G.S.X.
0.1316.3GmaAffx.60569.1.S1_atAt1g21640--2e+0At1g15757-O.I.H.G.S.X.
0.1215.1GmaAffx.9039.1.S1_s_atAt1g21640--6e-1At2g36261unknown proteinO.I.H.G.S.X.
0.1013.0GmaAffx.19421.1.A1_atAt1g21640--1e-1At4g26110NAP1O.I.H.G.S.X.
0.069.0Gma.16950.1.S1_atAt1g21640--3e+0At5g05330DNA bindingO.I.H.G.S.X.
0.058.0Gma.6585.1.S1_atAt1g21640--5e-3At1g69690TCP family transcription factor, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage