Co-expression analysis

Gene ID	Zm.13513.1.S1_at
Gene name	hypothetical protein LOC100193945
Homology with Arabidopsis	Similar to At2g18030: peptide methionine sulfoxide reductase family protein (HF=2e-3)
Module size	15 genes
NF	0.45
%ile	54.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	88.6	0.99	Zm.13513.1.S1_at	CO528571	hypothetical protein LOC100193945	-	2e-3	At2g18030	peptide methionine sulfoxide reductase family protein	O.I.	H.G.	S.X.	Please select
0.65	82.1	1.00	Zm.12402.1.S1_at	AY109060.1	hypothetical protein LOC100193926	-	3e-7	At4g33000	CBL10 (CALCINEURIN B-LIKE 10)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.99	ZmAffx.47.1.S1_at	AI664954	-	-	8e-1	At2g37030	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.99	Zm.4765.1.A1_at	AW461093	hypothetical protein LOC100193642	-	1e-4	At2g33470	GLTP1 (glycolipid transfer protein 1)	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.99	Zm.10332.1.A1_at	BQ048110	-	-	2e+0	At3g28990	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	1.00	ZmAffx.1038.1.S1_at	AI881773	hypothetical protein LOC100273522	-	3e+0	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.99	Zm.10216.1.A1_at	CD440291	hypothetical protein LOC100276703	-	7e-9	At3g05570	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	1.00	ZmAffx.220.1.A1_at	AI670228	-	-	3e+0	At4g14890	ferredoxin family protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	1.00	Zm.15937.1.A1_at	CO520791	-	-	5e+0	At3g25200	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	1.00	Zm.15817.1.A1_at	D87044.1	protein kinase catalytic domain	-	3e-8	At5g04870	CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.99	Zm.6083.2.A1_a_at	AF457979.1	hypothetical protein LOC100216609	-	1e-33	At5g23250	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	O.I.	H.G.	S.X.	Please select
0.38	44.2	1.00	ZmAffx.86.1.S1_at	AI665323	-	-	5e-5	At5g25265	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	1.00	Zm.5495.1.S1_at	AY103870.1	-	-	1e-30	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.99	ZmAffx.1139.1.A1_at	AW331649	-	-	5e+0	At5g07370	IPK2a (INOSITOL POLYPHOSPHATE KINASE 2 ALPHA)	O.I.	H.G.	S.X.	Please select
0.30	29.8	1.00	ZmAffx.1080.1.S1_at	AI948353	-	-	7e-1	At1g22790	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.9	GSM206317	Right pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.6	92.9	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.6	92.9	GSM206329	Right pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.5	92.6	GSM206323	Left pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.4	92.2	GSM206311	Left pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.4	92.2	GSM206291	Upper pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.4	92.2	GSM206296	Lower pulvinus 15 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.4	92.2	GSM206326	Upper pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.4	92.2	GSM206314	Upper pulvinus 15 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.4	92.2	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage