Co-expression analysis

Gene ID Zm.13485.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g16540: ZFN3 (ZINC FINGER NUCLEASE 3) (HF=3e-1)
Module size 7 genes
NF 0.41
%ile 47.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5976.10.89Zm.13485.1.S1_atAY108893.1--3e-1At5g16540ZFN3 (ZINC FINGER NUCLEASE 3)O.I.H.G.S.X.
0.6785.80.92Zm.17767.1.A1_atCK371577hypothetical protein LOC100191424-4e-1At2g14365LCR84 (Low-molecular-weight cysteine-rich 84)O.I.H.G.S.X.
0.4455.70.91RPTR-Zm-X17220-1_atRPTR-Zm-X17220-1---O.I.H.G.S.X.
0.4048.50.91RPTR-Zm-J01636-1_atRPTR-Zm-J01636-1---O.I.H.G.S.X.
0.3742.30.91Zm.1079.4.S1_x_atAY109373.1--2e-2At5g14740CA2 (CARBONIC ANHYDRASE 2)O.I.H.G.S.X.
0.3538.90.90Zm.13661.1.A1_atAY107142.1--2e+0At4g25710kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.2622.70.91Zm.2768.1.A1_atAW067159Hypothetical protein LOC100193535-1e+0At5g04760myb family transcription factorO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.298.0GSM206303Upper pulvinus 30 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO
7.297.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.697.6GSM206309Lower pulvinus 30 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO
5.797.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.796.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM206308Lower pulvinus 15 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO
4.296.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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