Co-expression analysis

Gene ID	Zm.13484.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g21660: CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) (HF=3e-1)
Module size	16 genes
NF	0.58
%ile	77.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	87.0	0.96	Zm.13484.1.S1_at	AY108906.1	-	-	3e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.	Please select
0.79	92.8	0.97	Zm.6692.1.S1_at	CA409229	hypothetical protein LOC100193785	-	3e-24	At3g24530	AAA-type ATPase family protein / ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.19204.1.S1_at	CA404362	protein phosphatase 2C-like	-	1e-3	At1g09160	protein phosphatase 2C-related / PP2C-related	O.I.	H.G.	S.X.	Please select
0.65	82.1	0.97	Zm.3450.1.A1_at	AW066723	hypothetical protein LOC100191605	-	4e+0	At2g38695	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	82.1	0.97	Zm.5860.4.S1_at	AI759079	-	-	3e+0	At4g19910	Toll-Interleukin-Resistance (TIR) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.62	79.8	0.97	Zm.19203.1.S1_at	CO520849	hypothetical protein LOC100193957	-	1e-5	At3g07220	transcriptional activator, putative	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.96	Zm.5190.2.S1_at	AI881895	-	-	3e+0	At2g21400	SRS3 (SHI-RELATED SEQUENCE3)	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.98	Zm.15089.1.S1_at	CN845421	hypothetical protein LOC100275959	-	6e+0	At5g55680	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.97	Zm.7333.1.A1_at	BG268640	kinesin heavy chain	-	2e-9	At3g20150	kinesin motor family protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.98	Zm.7334.1.S1_at	CD975420	kinesin-like protein16	-	2e-25	At5g41310	kinesin motor protein-related	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.7765.1.A1_at	BQ539662	-	-	3e-1	At1g53170	ERF8	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.97	Zm.7526.1.A1_at	BM078809	hypothetical protein LOC100194111	-	8e-2	At3g02050	KUP3 (K+ UPTAKE TRANSPORTER 3)	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.98	Zm.10200.2.A1_at	BM078569	-	-	1e+0	At5g57990	UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.6731.1.A1_at	AI395998	hypothetical protein LOC100279494	-	1e-14	At1g50670	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.96	Zm.7782.1.A1_at	BM079881	-	-	3e-1	At5g66250	kinectin-related	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.96	Zm.8732.1.A1_at	BM347474	esterase	-	3e+0	At5g53030	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.6	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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