Co-expression analysis

Gene ID Zm.13431.1.S1_at
Gene name hypothetical LOC542282
Homology with ArabidopsisSimilar to At3g54940: - (HF=2e+0)
Module size 11 genes
NF 0.66
%ile 88.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7892.50.88Zm.13431.1.S1_atAY110841.1hypothetical LOC542282-2e+0At3g54940-O.I.H.G.S.X.
0.8796.40.91Zm.17753.1.S1_atCK371208Hypothetical protein LOC100192575-7e-1At3g57950unknown proteinO.I.H.G.S.X.
0.8094.00.93Zm.13627.1.S1_atAY107420.1--3e-1At2g22200AP2 domain-containing transcription factorO.I.H.G.S.X.
0.7288.60.92Zm.6588.1.A1_atBM080221hypothetical protein LOC100192010-5e-23At1g78630emb1473 (embryo defective 1473)O.I.H.G.S.X.
0.6481.70.95Zm.6567.1.A1_atBM072999--2e+0At5g41030TCP family transcription factor, putativeO.I.H.G.S.X.
0.6077.80.93Zm.3518.1.A1_atBM337627--1e+0At2g22000PROPEP6 (Elicitor peptide 6 precursor)O.I.H.G.S.X.
0.5875.10.93Zm.18877.1.A1_atCO529651protein phosphatase 2C-3e-1At4g16580catalyticO.I.H.G.S.X.
0.5875.10.94Zm.5850.1.A1_atCF623894--2e-7At4g04910NSF (N-ethylmaleimide sensitive factor)O.I.H.G.S.X.
0.5775.10.91Zm.889.3.S1_atAI834601--3e-4At4g38740ROC1 (ROTAMASE CYP 1)O.I.H.G.S.X.
0.5065.70.94Zm.11730.1.S1_atBM380273hypothetical protein LOC100272845-2e-26At4g38970fructose-bisphosphate aldolase, putativeO.I.H.G.S.X.
0.3233.40.95Zm.3531.1.A1_atBQ035123p5cs-5e-12At3g55610P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.598.4GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320445protocol: mRNA - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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