Co-expression analysis

Gene ID Zm.13431.1.A1_at
Gene name hypothetical LOC542282
Homology with ArabidopsisSimilar to At3g54940: - (HF=2e+0)
Module size 6 genes
NF 0.27
%ile 23.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.98Zm.13431.1.A1_atAY110841.1hypothetical LOC542282-2e+0At3g54940-O.I.H.G.S.X.
0.3538.91.00Zm.12402.1.S1_atAY109060.1hypothetical protein LOC100193926-3e-7At4g33000CBL10 (CALCINEURIN B-LIKE 10)O.I.H.G.S.X.
0.2928.10.99ZmAffx.1208.1.A1_atBE186278--8e-1At1g20580small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.S.X.
0.2216.91.00Zm.10332.1.A1_atBQ048110--2e+0At3g28990unknown proteinO.I.H.G.S.X.
0.2014.20.99Zm.13513.1.S1_atCO528571hypothetical protein LOC100193945-2e-3At2g18030peptide methionine sulfoxide reductase family proteinO.I.H.G.S.X.
0.094.01.00ZmAffx.104.1.A1_atAI665536hypothetical protein LOC100273079-8e-1At2g34980SETH1O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5775.10.98Zm.3904.1.S1_atAY109271.1seed specific protein Bn15D17A-3e-1At3g2850060S acidic ribosomal protein P2 (RPP2C)O.I.H.G.S.X.
0.5571.61.00Zm.2605.1.S1_atAY105350.1hypothetical protein LOC100192590-2e+0At5g416706-phosphogluconate dehydrogenase family proteinO.I.H.G.S.X.
0.5065.70.99Zm.6366.1.S1_atCF634348transmembrane emp24 domain-containing protein 3-1e-5At3g07680emp24/gp25L/p24 family proteinO.I.H.G.S.X.
0.5065.70.99Zm.16531.1.A1_atAY109351.1--1e-14At5g35680eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putativeO.I.H.G.S.X.
0.5065.71.00ZmAffx.220.1.A1_atAI670228--3e+0At4g14890ferredoxin family proteinO.I.H.G.S.X.
0.4455.71.00ZmAffx.113.1.A1_atAI665585Hypothetical protein LOC100193950-3e+0At5g639903'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putativeO.I.H.G.S.X.
0.4455.71.00ZmAffx.833.1.A1_atAI770565--3e+0At4g21980APG8A (AUTOPHAGY 8A)O.I.H.G.S.X.
0.4455.70.99Zm.6440.1.A1_atAI691780hypothetical protein LOC100191807-4e+0At3g11340UDP-glucoronosyl/UDP-glucosyl transferase family proteinO.I.H.G.S.X.
0.4048.50.99Zm.6444.2.A1_atBM379891hypothetical protein LOC100192600-8e-64At5g0296040S ribosomal protein S23 (RPS23B)O.I.H.G.S.X.
0.4048.50.99Zm.15463.1.A1_atCO520005hypothetical protein LOC100279195-4e-18At5g43600UAH (UREIDOGLYCOLATE AMIDOHYDROLASE)O.I.H.G.S.X.
0.3641.30.99Zm.4131.1.A1_atAI855072--1e+0At4g20325unknown proteinO.I.H.G.S.X.
0.3641.31.00ZmAffx.571.1.S1_atAI714687Hypothetical protein LOC100191288-3e+0At5g20230ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN)O.I.H.G.S.X.
0.3336.00.99Zm.2682.1.A1_atBQ5381926-phosphofructokinase 2-5e+0At5g56630PFK7 (PHOSPHOFRUCTOKINASE 7)O.I.H.G.S.X.
0.3336.00.99Zm.13459.1.A1_atCO532418hypothetical protein LOC100279797-7e-12At5g58240bis(5'-adenosyl)-triphosphatase, putativeO.I.H.G.S.X.
0.3336.01.00ZmAffx.47.1.S1_atAI664954--8e-1At2g37030auxin-responsive family proteinO.I.H.G.S.X.
0.3131.61.00Zm.16895.1.A1_atBM075234--2e+0At5g15100PIN8 (PIN-FORMED 8)O.I.H.G.S.X.
0.2928.10.99Zm.10386.1.A1_atBU051031--9e+0At4g19550transcription regulator/ zinc ion bindingO.I.H.G.S.X.
0.2928.10.99Zm.19263.1.S1_atCO534196hypothetical protein LOC100192665-7e-1At4g11020unknown proteinO.I.H.G.S.X.
0.2928.10.99Zm.9008.2.A1_a_atAI665626delta zein structural18 /// prolamin /// prolamin-3e+0At3g27080TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3)O.I.H.G.S.X.
0.2928.11.00Zm.15817.1.A1_atD87044.1protein kinase catalytic domain-3e-8At5g04870CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1)O.I.H.G.S.X.
0.2928.11.00ZmAffx.828.1.S1_atAI770529--3e+0At2g32890RALFL17 (RALF-LIKE 17)O.I.H.G.S.X.
0.2724.60.99Zm.18441.1.S1_atCO523498hypothetical protein LOC100273640-5e-10At5g26740unknown proteinO.I.H.G.S.X.
0.2622.70.99Zm.15324.1.A1_atCB350660--4e-3At4g24230ACBP3 (ACYL-COA-BINDING DOMAIN 3)O.I.H.G.S.X.
0.2521.31.00ZmAffx.807.1.A1_atAI770389Hypothetical protein LOC100194367-3e+0At1g65650UCH2O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.199.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.099.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.899.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.899.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.799.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.898.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.798.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.398.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.698.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.795.4GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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