Co-expression analysis

Gene ID	Zm.13431.1.A1_at
Gene name	hypothetical LOC542282
Homology with Arabidopsis	Similar to At3g54940: - (HF=2e+0)
Module size	6 genes
NF	0.27
%ile	23.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.13431.1.A1_at	AY110841.1	hypothetical LOC542282	-	2e+0	At3g54940	-	O.I.	H.G.	S.X.	Please select
0.35	38.9	1.00	Zm.12402.1.S1_at	AY109060.1	hypothetical protein LOC100193926	-	3e-7	At4g33000	CBL10 (CALCINEURIN B-LIKE 10)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.99	ZmAffx.1208.1.A1_at	BE186278	-	-	8e-1	At1g20580	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select
0.22	16.9	1.00	Zm.10332.1.A1_at	BQ048110	-	-	2e+0	At3g28990	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.99	Zm.13513.1.S1_at	CO528571	hypothetical protein LOC100193945	-	2e-3	At2g18030	peptide methionine sulfoxide reductase family protein	O.I.	H.G.	S.X.	Please select
0.09	4.0	1.00	ZmAffx.104.1.A1_at	AI665536	hypothetical protein LOC100273079	-	8e-1	At2g34980	SETH1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.1	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, Contig4887_s_at, orthologous to the query gene, Zm.13431.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	Contig4887_s_at	At3g54940	-	-	8e-2	At2g45130	SPX3 (SPX DOMAIN GENE 3)	O.I.	H.G.	S.X.	Please select
0.53	69.7	Contig4886_at	At3g54940	-	-	2e-32	At5g56280	CSN6A	O.I.	H.G.	S.X.	Please select
0.50	66.9	EBma03_SQ002_J20_x_at	At3g54940	-	-	3e+0	At3g09250	DNA binding / nuclease	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig4820_at	At3g54940	-	-	1e-2	At1g63390	flavin-containing monooxygenase-related / FMO-related	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig7632_at	At3g54940	-	-	3e-16	At1g02205	CER1 (ECERIFERUM 1)	O.I.	H.G.	S.X.	Please select
0.11	9.4	Contig6921_at	At3g54940	-	-	7e-22	At5g45130	RHA1 (RAB HOMOLOG 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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