Co-expression analysis

Gene ID	Zm.13283.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g04778: unknown protein (HF=4e+0)
Module size	6 genes
NF	0.38
%ile	40.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.89	Zm.13283.1.S1_at	CA826693	-	-	4e+0	At1g04778	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.89	Zm.11955.1.A1_at	BM382121	-	-	4e+0	At1g49030	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.93	Zm.1967.1.A1_at	BG836522	pathogenesis-related protein 10 /// pathogenesis-related protein 1	-	1e-23	At1g77180	chromatin protein family	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.90	Zm.11663.1.A1_at	CO531620	hypothetical protein LOC100273622	-	2e+0	At4g28170	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.88	Zm.11710.1.A1_at	BM380117	-	-	1e+0	At5g15853	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.90	Zm.1506.1.A1_at	X82184.1	defence-related protein	-	1e-1	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.3	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.5	96.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1615246_at, orthologous to the query gene, Zm.13283.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1615246_at	At1g04778	hypothetical protein LOC100247907	-	7e-1	At4g28640	IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11)	O.I.	H.G.	S.X.	Please select
0.80	93.6	1616710_at	At1g04778	hypothetical protein LOC100248331	-	2e-8	At3g56370	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.73	90.8	1612479_at	At1g04778	hypothetical protein LOC100243093	-	1e-8	At1g01610	GPAT4 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4)	O.I.	H.G.	S.X.	Please select
0.42	60.1	1608919_at	At1g04778	hypothetical protein LOC100259569	-	7e-2	At2g32670	ATVAMP725	O.I.	H.G.	S.X.	Please select
0.40	57.7	1610729_at	At1g04778	hypothetical protein LOC100257029	-	3e+0	At5g44020	acid phosphatase class B family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1620618_at	At1g04778	hypothetical protein LOC100263626	-	1e-5	At4g26790	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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