Co-expression analysis

Gene ID	Zm.13283.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g04778: unknown protein (HF=4e+0)
Module size	6 genes
NF	0.38
%ile	40.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.89	Zm.13283.1.S1_at	CA826693	-	-	4e+0	At1g04778	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.89	Zm.11955.1.A1_at	BM382121	-	-	4e+0	At1g49030	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.93	Zm.1967.1.A1_at	BG836522	pathogenesis-related protein 10 /// pathogenesis-related protein 1	-	1e-23	At1g77180	chromatin protein family	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.90	Zm.11663.1.A1_at	CO531620	hypothetical protein LOC100273622	-	2e+0	At4g28170	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.88	Zm.11710.1.A1_at	BM380117	-	-	1e+0	At5g15853	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.90	Zm.1506.1.A1_at	X82184.1	defence-related protein	-	1e-1	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.3	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.5	96.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.5296.1.A1_at, orthologous to the query gene, Zm.13283.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	97.2	PtpAffx.5296.1.A1_at	At1g04778	hypothetical protein	-	3e-14	At4g22330	ATCES1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	Ptp.5560.1.A1_at	At1g04778	hypothetical protein	-	5e+0	At5g52040	ATRSP41	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.213766.1.S1_s_at	At1g04778	hypothetical protein	-	2e-32	At2g31800	ankyrin protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.203080.1.S1_at	At1g04778	hypothetical protein	-	3e-24	At3g51470	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.223426.1.S1_at	At1g04778	mitochondrial phosphate carrier protein	-	2e-74	At5g14040	mitochondrial phosphate transporter	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	PtpAffx.77105.1.S1_s_at	At1g04778	hypothetical protein	-	3e-5	At3g59290	epsin N-terminal homology (ENTH) domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.59806.1.A1_at	At1g04778	hypothetical protein	-	1e-8	At5g09590	MTHSC70-2 (MITOCHONDRIAL HSP70 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	PtpAffx.202007.1.S1_at	At1g04778	amino acid transporter	-	2e-1	At1g52040	MBP1 (MYROSINASE-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.200200.1.S1_x_at	At1g04778	hypothetical protein	-	2e-16	At3g24160	PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.153966.2.A1_at	At1g04778	hypothetical protein	-	1e-7	At1g65320	CBS domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.58297.1.S1_at	At1g04778	hypothetical protein	-	6e-39	At1g12990	glycosyl transferase family 17 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.222895.1.S1_s_at	At1g04778	hypothetical protein	-	4e+0	At5g53592	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.120529.1.A1_s_at	At1g04778	hypothetical protein	-	2e-7	At1g72170	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.16744.1.S1_at	At1g04778	2-oxoglutarate-dependent dioxygenase /// hypothetical protein	-	5e-11	At1g35190	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.21546.1.S1_at	At1g04778	hypothetical protein	-	4e+0	At4g01460	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.66439.1.S1_a_at	At1g04778	hypothetical protein	-	9e-15	At3g50110	ATPEN3 (ARABIDOPSIS THALIANA PTEN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.211427.1.S1_at	At1g04778	hypothetical protein	-	1e-20	At1g10720	BSD domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.85663.1.S1_at	At1g04778	hypothetical protein	-	4e-24	At5g10730	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.39223.1.A1_at	At1g04778	hypothetical protein	-	9e-34	At2g43040	NPG1 (no pollen germination 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.213661.1.S1_at	At1g04778	hypothetical protein	-	2e-10	At3g51770	ETO1 (ETHYLENE OVERPRODUCER 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.31285.1.A1_at	At1g04778	hypothetical protein	-	1e-3	At5g05380	PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.201782.1.S1_s_at	At1g04778	hypothetical protein	-	2e-74	At4g09810	transporter-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.11683.1.A1_at	At1g04778	hypothetical protein	-	1e-13	At4g30200	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	Ptp.2347.1.A1_at	At1g04778	hypothetical protein	-	1e-140	At3g27240	cytochrome c1, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.207061.1.S1_s_at	At1g04778	hypothetical protein	-	3e-109	At5g64030	dehydration-responsive protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	Ptp.774.1.A1_at	At1g04778	-	-	6e-6	At2g18250	ATCOAD (4-phosphopantetheine adenylyltransferase)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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