Co-expression analysis

Gene ID Zm.13280.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g18748: unknown protein (HF=4e+0)
Module size 23 genes
NF 0.24
%ile 19.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9699.80.81Zm.13280.1.S1_atCA826511--4e+0At5g18748unknown proteinO.I.H.G.S.X.
0.4455.70.91Zm.14566.1.S1_atBM381341photosystem II 11 kD protein-4e-1At2g05510glycine-rich proteinO.I.H.G.S.X.
0.4149.70.89Zm.17338.4.A1_atAI670678Hypothetical protein LOC100193489-3e+0At5g27820ribosomal protein L18 family proteinO.I.H.G.S.X.
0.3945.60.89Zm.5579.1.A1_atCF630296fumarylacetoacetate hydrolase domain-containing protein 1-1e-1At3g16700fumarylacetoacetate hydrolase family proteinO.I.H.G.S.X.
0.3844.20.82Zm.13558.1.A1_atBQ163517--1e-3At1g26340CB5-A (CYTOCHROME B5 ISOFORM A)O.I.H.G.S.X.
0.3131.60.91Zm.6166.2.A1_atCO529261hypothetical protein LOC100278925-6e-2At1g13870DRL1 (DEFORMED ROOTS AND LEAVES 1)O.I.H.G.S.X.
0.2828.10.91Zm.2197.1.S1_a_atAF007785.1cystathionine gamma-synthase1-6e-5At3g01120MTO1 (METHIONINE OVERACCUMULATION 1)O.I.H.G.S.X.
0.2828.10.88Zm.12617.1.A1_atBU050965--1e+0At3g13920EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1)O.I.H.G.S.X.
0.2622.70.91Zm.584.4.S1_atAY104089.1pericarp color1-3e-8At4g38620MYB4O.I.H.G.S.X.
0.2622.70.91Zm.4541.1.S1_atAY104176.1hypothetical protein LOC100274427-5e-8At5g67400peroxidase 73 (PER73) (P73) (PRXR11)O.I.H.G.S.X.
0.2521.30.91Zm.12571.1.A1_atAI833612ribosome recycling factor-5e-1At3g01800ribosome recycling factor family protein / ribosome releasing factor family proteinO.I.H.G.S.X.
0.2419.80.90Zm.1866.1.A1_atAW498013--5e-7At4g11270transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.2419.80.84Zm.15861.1.A1_atAW355929lil3 protein-8e-2At5g47110lil3 protein, putativeO.I.H.G.S.X.
0.2318.60.91ZmAffx.706.1.A1_atAI738209--8e-1At1g23590unknown proteinO.I.H.G.S.X.
0.2014.20.86Zm.3892.5.A1_atBM07963460S ribosomal protein L28-6e-7At2g1973060S ribosomal protein L28 (RPL28A)O.I.H.G.S.X.
0.1710.60.92Zm.18345.1.S1_atCO522637EMB2756-9e-4At5g42660unknown proteinO.I.H.G.S.X.
0.1710.60.91Zm.12876.1.S1_atCF63210324-methylenesterol C-methyltransferase 2-8e+0At3g62970protein binding / zinc ion bindingO.I.H.G.S.X.
0.1710.60.89Zm.12994.1.S1_atCF627591--7e-4At5g60980nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.169.40.89Zm.1419.1.S1_atCO527884hypothetical protein LOC100272880-1e+1At3g19910zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.125.90.89Zm.5641.1.A1_atAI629775Na+/H+ antiporter, probable CP0838-1e-47At3g19490ATNHD1O.I.H.G.S.X.
0.115.30.92ZmAffx.1284.1.S1_at40794996-132--6e-1At4g36020CSDP1 (cold shock domain protein 1)O.I.H.G.S.X.
0.104.60.90Zm.12387.1.S1_atAW000286--2e+1Atmg01300-O.I.H.G.S.X.
0.094.00.92Zm.9384.1.A1_atBM349149--6e+0At4g28170unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.498.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.398.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.198.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.797.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.893.5GSM320471protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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