Co-expression analysis

Gene ID Zm.13232.1.S1_at
Gene name tyrosine/DOPA decarboxylase 2
Homology with ArabidopsisSimilar to At2g04630: NRPB6B (HF=9e-1)
Module size 7 genes
NF 0.58
%ile 77.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6381.10.99Zm.13232.1.S1_atCA452744tyrosine/DOPA decarboxylase 2-9e-1At2g04630NRPB6BO.I.H.G.S.X.
0.7188.20.99Zm.4869.2.S1_atAI603770hypothetical protein LOC100274701-1e-20At3g07050GTP-binding family proteinO.I.H.G.S.X.
0.5775.10.99Zm.7144.1.A1_atCD437816chalcone isomerase 3-2e+0At1g73260trypsin and protease inhibitor family protein / Kunitz family proteinO.I.H.G.S.X.
0.5674.40.99Zm.7091.1.A1_x_atU23190.1chlorophyll a/b-binding apoprotein CP24 precursor-3e-15At1g15820LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6)O.I.H.G.S.X.
0.5674.40.99Zm.7240.1.S1_atBI430972--1e-18At5g614502-phosphoglycerate kinase-relatedO.I.H.G.S.X.
0.4251.30.99Zm.4863.1.S1_atAW600383--2e-1At2g38465unknown proteinO.I.H.G.S.X.
0.3336.00.99Zm.7090.1.S1_atAY105718.1hypothetical protein LOC100191899-6e+0At5g01740-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.797.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.297.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.196.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.896.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.896.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.296.0GSM385710Deep-sowing 10d treatment TIBA, biological rep2GSE15371Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowingLink to GEO
4.296.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.64767.1.S1_at, orthologous to the query gene, Zm.13232.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7389.1TaAffx.64767.1.S1_atAt2g04630--4e+0At2g24590splicing factor, putativeO.I.H.G.S.X.
0.5072.4Ta.8188.1.S1_atAt2g04630--1e-11At4g33880basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.3346.9TaAffx.56615.1.S1_atAt2g04630--7e-1At1g28050zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.2125.5Ta.5568.2.S1_atAt2g04630--2e+1At5g55950transporter-relatedO.I.H.G.S.X.
0.1922.4Ta.14333.1.A1_atAt2g04630--5e+0At5g06890-O.I.H.G.S.X.
0.0910.4TaAffx.25423.1.S1_atAt2g04630--4e+0At4g37810unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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