Co-expression analysis

Gene ID	Zm.13226.2.A1_at
Gene name	40S ribosomal protein S9
Homology with Arabidopsis	Similar to At5g39850: 40S ribosomal protein S9 (RPS9C) (HF=1e-41)
Module size	6 genes
NF	0.44
%ile	52.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	79.5	0.97	Zm.13226.2.A1_at	CF012904	40S ribosomal protein S9	-	1e-41	At5g39850	40S ribosomal protein S9 (RPS9C)	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.97	Zm.7648.1.A1_at	CO517814	hypothetical protein LOC100191181	-	5e-7	At5g40160	EMB506 (embryo defective 506)	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.96	Zm.3554.3.A1_at	BM335933	ribosomal protein L9, N-terminal domain containing protein	-	4e-1	At5g53070	ribosomal protein L9 family protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.6149.1.A1_at	CA399198	omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2	-	9e-1	At5g43070	WPP1 (WPP domain protein 1)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.788.1.A1_x_at	AY103572.1	Hypothetical protein LOC100194151	-	7e-72	At3g27240	cytochrome c1, putative	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.97	Zm.5288.1.S1_at	CA828006	-	-	2e+0	At1g11980	RUB3 (UBIQUITIN-RELATED PROTEIN 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	94.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3	91.7	GSM258535	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 3	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
2.2	91.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.1	90.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.0	90.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.0	90.2	GSM258537	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 4	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
1.9	89.6	GSM258531	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 1	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
1.8	88.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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