Co-expression analysis

Gene ID Zm.13202.1.A1_at
Gene name hypothetical protein LOC100273129
Homology with ArabidopsisSimilar to At1g56590: clathrin adaptor complexes medium subunit family protein (HF=1e-8)
Module size 6 genes
NF 0.70
%ile 91.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.99Zm.13202.1.A1_atCA403491hypothetical protein LOC100273129-1e-8At1g56590clathrin adaptor complexes medium subunit family proteinO.I.H.G.S.X.
0.6785.80.98Zm.737.2.A1_atAI746142--4e-6At5g60360AALP (Arabidopsis aleurain-like protease)O.I.H.G.S.X.
0.6179.50.98Zm.3707.1.A1_atAY107773.1vacuolar cation/proton exchanger 2-1e-4At3g13320CAX2 (CATION EXCHANGER 2)O.I.H.G.S.X.
0.6179.50.98Zm.2602.1.S1_atAY109922.1hypothetical protein LOC100217277-1e-2At5g243403'-5' exonuclease domain-containing proteinO.I.H.G.S.X.
0.5065.70.98Zm.5729.1.A1_atAI637125peptidoglycan binding domain containing protein-3e-23At4g13670PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)O.I.H.G.S.X.
0.5065.70.99Zm.17172.1.A1_atAI664919--2e+0At1g55675unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.999.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.899.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.499.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.898.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.898.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.698.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.797.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.394.7GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1622109_at, orthologous to the query gene, Zm.13202.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7792.31622109_atAt1g56590hypothetical protein LOC100259756-5e-10At1g05385photosystem II 11 kDa protein-relatedO.I.H.G.S.X.
0.8093.61617061_s_atAt1g56590hypothetical protein LOC100243475-2e-15At5g55220trigger factor type chaperone family proteinO.I.H.G.S.X.
0.7491.01620684_atAt1g56590hypothetical protein LOC100244408-5e-10At1g64510ribosomal protein S6 family proteinO.I.H.G.S.X.
0.7390.81615609_atAt1g56590hypothetical protein LOC100268043-1e-11At3g25920RPL15O.I.H.G.S.X.
0.6988.31609228_atAt1g56590hypothetical protein LOC100247047-9e-5At2g21385unknown proteinO.I.H.G.S.X.
0.6787.91606797_atAt1g56590similar to 50S ribosomal protein L17, chloroplastic-3e-8At3g54210ribosomal protein L17 family proteinO.I.H.G.S.X.
0.6787.91610716_atAt1g56590hypothetical protein LOC100265925-5e-16At3g15190chloroplast 30S ribosomal protein S20, putativeO.I.H.G.S.X.
0.6585.01607466_atAt1g56590similar to EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome-2e-17At1g05190emb2394 (embryo defective 2394)O.I.H.G.S.X.
0.6484.71621399_s_atAt1g56590--3e-13At3g63190RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)O.I.H.G.S.X.
0.6384.31614655_atAt1g56590hypothetical protein LOC100267459-2e-61At5g45930CHLI2 (MAGNESIUM CHELATASE I2)O.I.H.G.S.X.
0.6283.31615470_atAt1g56590similar to EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome-1e-2At1g05190emb2394 (embryo defective 2394)O.I.H.G.S.X.
0.5980.61610549_atAt1g56590--1e-9At4g01690PPOXO.I.H.G.S.X.
0.5375.21617122_s_atAt1g56590hypothetical protein LOC100258002-8e-11At2g38140PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4)O.I.H.G.S.X.
0.4969.31607287_a_atAt1g56590hypothetical protein LOC100248273-3e-16At3g56910PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)O.I.H.G.S.X.
0.4767.71622495_atAt1g56590hypothetical protein LOC100248841-4e-26At1g74970RPS9 (RIBOSOMAL PROTEIN S9)O.I.H.G.S.X.
0.4158.71606458_atAt1g56590hypothetical protein LOC100251697-4e-11At3g44890RPL9 (RIBOSOMAL PROTEIN L9)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



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