CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.13202.1.A1_at

Gene name hypothetical protein LOC100273129
Homology with Arabidopsis Similar to At1g56590: clathrin adaptor complexes medium subunit family protein (HF=1e-8)

Module size 6 genes

NF 0.70

%ile 91.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.99 Zm.13202.1.A1_at CA403491 hypothetical protein LOC100273129 - 1e-8 At1g56590 clathrin adaptor complexes medium subunit family protein O.I. H.G. S.X.
0.67 85.8 0.98 Zm.737.2.A1_at AI746142 - - 4e-6 At5g60360 AALP (Arabidopsis aleurain-like protease) O.I. H.G. S.X.
0.61 79.5 0.98 Zm.3707.1.A1_at AY107773.1 vacuolar cation/proton exchanger 2 - 1e-4 At3g13320 CAX2 (CATION EXCHANGER 2) O.I. H.G. S.X.
0.61 79.5 0.98 Zm.2602.1.S1_at AY109922.1 hypothetical protein LOC100217277 - 1e-2 At5g24340 3'-5' exonuclease domain-containing protein O.I. H.G. S.X.
0.50 65.7 0.98 Zm.5729.1.A1_at AI637125 peptidoglycan binding domain containing protein - 3e-23 At4g13670 PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5) O.I. H.G. S.X.
0.50 65.7 0.99 Zm.17172.1.A1_at AI664919 - - 2e+0 At1g55675 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.9 99.1 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8 99.1 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4 99.0 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8 98.8 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8 98.7 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6 98.6 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6 98.3 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4 98.3 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7 97.9 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3 94.7 GSM320457 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g56590, orthologous to the query gene, Zm.13202.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.61 76.7 At1g56590 842113 clathrin adaptor complexes medium subunit family protein F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, clathrin adaptor complex;MFOP O.I. H.G. S.X.
0.80 89.8 At1g67930 843121 Golgi transport complex protein-related F:unknown;P:unknown;C:chloroplast;OMFBPV O.I. H.G. S.X.
0.80 89.8 At3g24350 822024 SYP32 (SYNTAXIN OF PLANTS 32) member of Glycoside Hydrolase Family 17 O.I. H.G. S.X.
0.73 85.5 At4g18060 827531 clathrin binding F:clathrin binding;P:unknown;C:unknown;MOFPB O.I. H.G. S.X.
0.55 70.6 At1g04910 839373 unknown protein F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;P O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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