Co-expression analysis

Gene ID Zm.13162.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g02040: SRG3 (senescence-related gene 3) (HF=9e-3)
Module size 7 genes
NF 0.60
%ile 80.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4658.40.99Zm.13162.1.A1_atCO521967--9e-3At3g02040SRG3 (senescence-related gene 3)O.I.H.G.S.X.
0.7389.90.99Zm.4625.1.A1_atAI737394--8e-1At1g78630emb1473 (embryo defective 1473)O.I.H.G.S.X.
0.7389.90.99ZmAffx.925.1.S1_atAI795348--8e-1At1g43171unknown proteinO.I.H.G.S.X.
0.6179.50.99Zm.9555.2.A1_atCK347442--3e+0At2g22241unknown proteinO.I.H.G.S.X.
0.5571.60.99ZmAffx.786.1.A1_atAI759096--3e-3At1g72450JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6)O.I.H.G.S.X.
0.5065.70.99Zm.18993.1.S1_atCO528827--3e-3At2g10950BSD domain-containing proteinO.I.H.G.S.X.
0.3641.31.00Zm.13658.1.A1_atAY107148.1hypothetical protein LOC100193262-1e+0At3g50350unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8896.70.99ZmAffx.224.1.A1_atAI670233--8e-1At5g06770KH domain-containing protein / zinc finger (CCCH type) family proteinO.I.H.G.S.X.
0.7389.90.99Zm.13914.1.A1_atAF145706.1plasma membrane intrinsic protein homolog-8e-14At3g61430PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A)O.I.H.G.S.X.
0.6381.10.99Zm.8375.1.A1_atBM080176--2e-2At5g25450ubiquinol-cytochrome C reductase complex 14 kDa protein, putativeO.I.H.G.S.X.
0.6077.80.99Zm.16237.1.A1_atCF624893--5e-13At2g30110ATUBA1O.I.H.G.S.X.
0.5469.80.99Zm.12666.1.S1_a_atAY536122.1meg2 protein /// meg4 protein /// meg6 protein-3e-1At1g07480transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L)O.I.H.G.S.X.
0.5369.10.99ZmAffx.885.1.A1_atAI770822--2e-4At1g77670aminotransferase class I and II family proteinO.I.H.G.S.X.
0.5369.10.99ZmAffx.566.1.A1_atAI714636--2e-1At5g05610AL1 (ALFIN-LIKE 1)O.I.H.G.S.X.
0.5267.30.99Zm.9891.1.A1_atBM350582--1e+0At5g27290unknown proteinO.I.H.G.S.X.
0.5065.70.98Zm.3842.1.S1_atAW573375hypothetical protein LOC100277154-8e-1At1g26440ATUPS5 (ARABIDOPSIS THALIANA UREIDE PERMEASE 5)O.I.H.G.S.X.
0.5065.70.99Zm.13706.1.S1_atCF633777--5e-15At3g58640protein kinase family proteinO.I.H.G.S.X.
0.5065.70.99Zm.16505.1.A2_atCF633865--0At5g56030HSP81-2 (HEAT SHOCK PROTEIN 81-2)O.I.H.G.S.X.
0.4455.70.98Zm.9255.1.S1_atCF632616hypothetical protein LOC100191322-2e-17At1g50940ETFALPHA (electron transfer flavoprotein alpha)O.I.H.G.S.X.
0.4455.70.99Zm.6961.1.A1_atAY104000.1hypothetical protein LOC100191822-3e-18At3g03340UNE6 (unfertilized embryo sac 6)O.I.H.G.S.X.
0.4352.80.99Zm.12535.1.S1_atAY105384.1hypothetical protein LOC100278440-9e+0At5g01390DNAJ heat shock protein, putativeO.I.H.G.S.X.
0.4352.80.99Zm.17591.2.S1_atCK347917--2e-52At1g14670endomembrane protein 70, putativeO.I.H.G.S.X.
0.4251.30.99Zm.4022.1.S1_a_atX57275.1hypothetical protein LOC100276549-4e-1At5g40420OLEO2 (OLEOSIN 2)O.I.H.G.S.X.
0.4251.30.99Zm.7645.1.A1_atBM379053--5e+0At5g46300unknown proteinO.I.H.G.S.X.
0.4149.70.99Zm.1120.1.A1_atAY112024.1--1e+0At2g38185zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4048.50.99ZmAffx.71.1.S1_atAI665169--3e+0At1g50640ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3)O.I.H.G.S.X.
0.4048.50.99Zm.6557.1.S1_atCF635193--4e-34At1g10290ADL6 (DYNAMIN-LIKE PROTEIN 6)O.I.H.G.S.X.
0.3844.20.99ZmAffx.734.1.A1_atAI740044--1e+1At5g01670aldose reductase, putativeO.I.H.G.S.X.
0.3844.20.99Zm.4359.2.A1_x_atAI795776EMB2756-2e+0At5g52160protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.3742.30.98Zm.9549.2.A1_atBM332597hypothetical protein LOC100191610-1e-32At4g18710BIN2 (BRASSINOSTEROID-INSENSITIVE 2)O.I.H.G.S.X.
0.3641.30.99Zm.8958.1.A1_atCK370494hypothetical protein LOC100274587-2e+0At1g35320unknown proteinO.I.H.G.S.X.
0.3641.30.98--O.I.H.G.S.X.
0.3641.30.99ZmAffx.1098.1.A1_atAW126565triacylglycerol lipase-3e+0At1g71260ATWHY2 (A. THALIANA WHIRLY 2)O.I.H.G.S.X.
0.3641.30.98--O.I.H.G.S.X.
0.3336.00.99ZmAffx.932.1.S1_atAI795506--3e+0At5g22430unknown proteinO.I.H.G.S.X.
0.3233.40.99Zm.17378.2.A1_x_atCK985826hypothetical protein LOC100191222-2e-16At2g21170TIM (TRIOSEPHOSPHATE ISOMERASE)O.I.H.G.S.X.
0.3233.40.99Zm.17775.1.S1_atCF62760250S ribosomal protein L12-2-5e+0At4g14358-O.I.H.G.S.X.
0.3131.60.98Zm.3910.1.S1_atBQ485300hypothetical protein LOC100273948-8e+0At4g05590unknown proteinO.I.H.G.S.X.
0.3131.60.99Zm.13194.2.A1_atAY108895.1Hypothetical protein LOC100191145-5e-3At4g36500unknown proteinO.I.H.G.S.X.
0.3131.60.99Zm.155.1.A1_a_atAI667827brittle endosperm1-4e-3At4g32400SHS1 (SODIUM HYPERSENSITIVE 1)O.I.H.G.S.X.
0.2928.10.98Zm.3368.1.A1_atAY107360.1hypothetical protein LOC100272602-4e-31At1g15500ATNTT2O.I.H.G.S.X.
0.2928.10.99Zm.433.1.A1_atAF069908.1pyruvate dehydrogenase2-1e-43At5g50850MAB1 (MACCI-BOU)O.I.H.G.S.X.
0.2928.10.99Zm.9931.1.A1_atBM339241--2e+0At1g72360ethylene-responsive element-binding protein, putativeO.I.H.G.S.X.
0.2928.10.99Zm.14784.1.A1_atBG841481--3e+0At3g01175-O.I.H.G.S.X.
0.2928.10.99ZmAffx.752.1.A1_atAI712129dihydroflavonol-4-reductase-1e+1At4g02770PSAD-1 (photosystem I subunit D-1)O.I.H.G.S.X.
0.2928.10.99Zm.14074.1.A1_atAY104605.1--2e-11At1g07110F2KP (FRUCTOSE-2,6-BISPHOSPHATASE)O.I.H.G.S.X.
0.2928.10.99ZmAffx.459.1.S1_atAI677212--8e-1At1g2691060S ribosomal protein L10 (RPL10B)O.I.H.G.S.X.
0.2828.10.97Zm.8668.1.A1_atBM348094--1e+0At5g05300unknown proteinO.I.H.G.S.X.
0.2828.10.99Zm.14617.1.A1_atBM080453Hypothetical protein LOC100191188-2e+0At2g33130RALFL18 (ralf-like 18)O.I.H.G.S.X.
0.2724.60.98Zm.8426.1.A1_atBM347536hypothetical protein LOC100216659-8e-1At1g71691GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.2724.60.99Zm.15379.1.A1_atBG842487--5e+0At2g30424TCL2 (TRICHOMELESS 2)O.I.H.G.S.X.
0.2724.60.97Zm.256.1.A1_atAI737921auxin import carrier1-2e-17At2g21050amino acid permease, putativeO.I.H.G.S.X.
0.2724.60.99ZmAffx.913.1.A1_atAI770960--8e-1At4g20460NAD-dependent epimerase/dehydratase family proteinO.I.H.G.S.X.
0.2622.70.98Zm.15922.1.S1_atCB278184hypothetical protein LOC100192051-2e-1At3g05220heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.2622.70.98Zm.13846.1.S1_atAY103949.1--6e-1At5g07600oleosin / glycine-rich proteinO.I.H.G.S.X.
0.2521.30.98ZmAffx.907.1.S1_atAI770929--1e+1At5g37780CAM1 (CALMODULIN 1)O.I.H.G.S.X.
0.2521.30.99ZmAffx.980.1.S1_atAI714647--3e+0At4g28485unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.398.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.697.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.996.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.995.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.391.7GSM253270ZM_4.5d_Mock_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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