Co-expression analysis

Gene ID Zm.13162.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g02040: SRG3 (senescence-related gene 3) (HF=9e-3)
Module size 7 genes
NF 0.60
%ile 80.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4658.40.99Zm.13162.1.A1_atCO521967--9e-3At3g02040SRG3 (senescence-related gene 3)O.I.H.G.S.X.
0.7389.90.99Zm.4625.1.A1_atAI737394--8e-1At1g78630emb1473 (embryo defective 1473)O.I.H.G.S.X.
0.7389.90.99ZmAffx.925.1.S1_atAI795348--8e-1At1g43171unknown proteinO.I.H.G.S.X.
0.6179.50.99Zm.9555.2.A1_atCK347442--3e+0At2g22241unknown proteinO.I.H.G.S.X.
0.5571.60.99ZmAffx.786.1.A1_atAI759096--3e-3At1g72450JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6)O.I.H.G.S.X.
0.5065.70.99Zm.18993.1.S1_atCO528827--3e-3At2g10950BSD domain-containing proteinO.I.H.G.S.X.
0.3641.31.00Zm.13658.1.A1_atAY107148.1hypothetical protein LOC100193262-1e+0At3g50350unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.398.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.697.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.996.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.995.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.391.7GSM253270ZM_4.5d_Mock_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os04g0394100, orthologous to the query gene, Zm.13162.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.98100.0Os04g0394100At3g02040-Glycerophosphoryl diester phosphodiesterase familyprotein4e-2At3g02040SRG3 (senescence-related gene 3)O.I.H.G.S.X.
0.4458.1Os09g0244600At3g02040-Conserved hypothetical protein4e-1At5g61410RPEO.I.H.G.S.X.
0.3846.9Os07g0667500At3g02040--2e+0At2g35710glycogenin glucosyltransferase (glycogenin)-relatedO.I.H.G.S.X.
0.3644.0Os09g0288000At3g02040--2e-2At1g30210TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24)O.I.H.G.S.X.
0.3541.7Os07g0629701At3g02040--2e-2At4g38100unknown proteinO.I.H.G.S.X.
0.3338.8Os11g0667200At3g02040--2e+0At5g06650GIS2 (GLABROUS INFLORESCENCE STEMS 2)O.I.H.G.S.X.
0.3236.3Os04g0206800At3g02040--2e+0At3g06740zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.2727.5Os04g0487800At3g02040--4e+0At5g13750ZIFL1 (ZINC INDUCED FACILITATOR-like 1)O.I.H.G.S.X.
0.2727.5Os03g0664300At3g02040--7e-1At5g03050unknown proteinO.I.H.G.S.X.
0.2625.6Os08g0267700At3g02040--3e-1At1g09140SF2/ASF-like splicing modulator (SRP30)O.I.H.G.S.X.
0.2625.6Os01g0620400At3g02040-Hypothetical protein2e+1At5g15860ATPCME (PRENYLCYSTEINE METHYLESTERASE)O.I.H.G.S.X.
0.2625.6Os01g0876200At3g02040-Hypothetical protein4e-4At5g49890CLC-C (CHLORIDE CHANNEL C)O.I.H.G.S.X.
0.2422.4Os08g0103200At3g02040--5e-3At3g50980XERO1 (DEHYDRIN XERO 1)O.I.H.G.S.X.
0.2422.4Os02g0246500At3g02040--9e-1At3g56400WRKY70O.I.H.G.S.X.
0.2117.9Os07g0282975At3g02040--3e-2At3g23010AtRLP36 (Receptor Like Protein 36)O.I.H.G.S.X.
0.2016.5Os09g0499150At3g02040--2e+0At2g34740catalytic/ protein serine/threonine phosphataseO.I.H.G.S.X.
0.1813.7Os01g0740000At3g02040-Hypothetical protein5e+0At1g64440RHD1 (ROOT HAIR DEFECTIVE 1)O.I.H.G.S.X.
0.1712.6Os06g0642200At3g02040--2e-1At4g13310CYP71A20O.I.H.G.S.X.
0.1712.6Os01g0283400At3g02040-Conserved hypothetical protein3e-1At5g06480MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinO.I.H.G.S.X.
0.1611.3Os04g0335500At3g02040--3e-1At3g25030zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1611.3Os01g0272901At3g02040--4e+0At5g48490protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.1611.3Os11g0672800At3g02040-Hypothetical protein3e-1At5g62320ATMYB99 (MYB DOMAIN PROTEIN 99)O.I.H.G.S.X.
0.1510.3Os12g0236633At3g02040--2e-1At3g42385unknown proteinO.I.H.G.S.X.
0.149.3Os01g0147400At3g02040-Protein of unknown function XS domain containingprotein3e-6At4g00380XH/XS domain-containing protein / XS zinc finger domain-containing proteinO.I.H.G.S.X.
0.138.2Os03g0568700At3g02040--4e+0At1g79780-O.I.H.G.S.X.
0.127.2Os08g0505600At3g02040--7e-1At5g58890AGL82 (AGAMOUS-LIKE 82)O.I.H.G.S.X.
0.127.2Os10g0145000At3g02040-Cyclin-like F-box domain containing protein8e-1At4g22600unknown proteinO.I.H.G.S.X.
0.116.5Os04g0515000At3g02040--1e+0At4g34290SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.116.5Os03g0601400At3g02040--5e+0At5g06470glutaredoxin family proteinO.I.H.G.S.X.
0.116.5Os11g0573900At3g02040-Hypothetical protein7e-1At3g29240unknown proteinO.I.H.G.S.X.
0.094.9Os07g0416100At3g02040-Conserved hypothetical protein3e+0At2g41290strictosidine synthase family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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