Co-expression analysis

Gene ID Zm.13136.1.A1_at
Gene name hypothetical protein LOC100191921
Homology with ArabidopsisSimilar to At4g32900: aminoacyl-tRNA hydrolase (HF=4e+0)
Module size 6 genes
NF 0.63
%ile 84.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.94Zm.13136.1.A1_atCA404810hypothetical protein LOC100191921-4e+0At4g32900aminoacyl-tRNA hydrolaseO.I.H.G.S.X.
0.7792.10.90ZmAffx.1405.1.S1_at40794996-80--0Atmg00510-O.I.H.G.S.X.
0.7792.10.91ZmAffx.475.1.S1_atAI677510--2e-1At1g74210glycerophosphoryl diester phosphodiesterase family proteinO.I.H.G.S.X.
0.7188.20.94Zm.3876.1.S1_atAY111960.1hypothetical protein LOC100278092-5e+0At4g17030ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)O.I.H.G.S.X.
0.5571.60.94Zm.13055.2.S1_atCA403909nuclear transcription factor Y subunit B-3-6e-19At4g14540NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)O.I.H.G.S.X.
0.1710.60.94Zm.17833.1.S1_atCK394754hypothetical protein LOC100277612-2e+0At3g13740URF 4-relatedO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.80.82Zm.6081.1.S1_atAY108128.1hypothetical protein LOC100276151-1e-1At2g27730unknown proteinO.I.H.G.S.X.
0.6785.80.91Zm.15323.1.A1_atBM349667PH domain containing protein-4e-1At3g0256040S ribosomal protein S7 (RPS7B)O.I.H.G.S.X.
0.6179.50.92Zm.4733.1.A1_atCD441088hypothetical protein LOC100193930-2e-14At1g76900AtTLP1 (TUBBY LIKE PROTEIN 1)O.I.H.G.S.X.
0.5976.10.87Zm.13261.2.S1_a_atBQ048034ER-derived vesicles protein ERV14-2e+0At4g40011unknown proteinO.I.H.G.S.X.
0.5571.60.90Zm.5949.1.A1_atAY108629.1--7e-2At4g21560VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1)O.I.H.G.S.X.
0.5369.10.88Zm.15732.2.A1_a_atAI734668hypothetical protein LOC100280046-1e+0At3g45160unknown proteinO.I.H.G.S.X.
0.4861.30.86Zm.18321.1.A1_atCF637738hypothetical protein LOC100193454-5e-1At3g03950protein bindingO.I.H.G.S.X.
0.4658.40.90ZmAffx.79.1.S1_atAI665266--4e+0At4g25720QC (GLUTAMINYL CYCLASE)O.I.H.G.S.X.
0.4658.40.92Zm.13190.1.A1_atCD433968--2e-1At3g23830GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4)O.I.H.G.S.X.
0.4455.70.95ZmAffx.818.1.S1_atAI770442plant-specific domain TIGR01568 family protein-3e+0At5g05380PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3)O.I.H.G.S.X.
0.3945.60.87Zm.12715.1.S1_atBQ529164hypothetical protein LOC100278967-7e-1At3g21860ASK10 (ARABIDOPSIS SKP1-LIKE 10)O.I.H.G.S.X.
0.3641.30.83Zm.1815.1.A1_atCF626161kinesin-like protein2-2e-22At3g01090AKIN10 (Arabidopsis SNF1 kinase homolog 10)O.I.H.G.S.X.
0.3538.90.84Zm.18101.1.S1_atCA827356--5e+0At4g36020CSDP1 (cold shock domain protein 1)O.I.H.G.S.X.
0.3437.20.85Zm.3242.1.A1_atAW506827--2e-12At4g32390phosphate translocator-relatedO.I.H.G.S.X.
0.3437.20.85Zm.3255.1.A1_atBG842791hypothetical protein LOC100194287-1e+0At1g49720ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1)O.I.H.G.S.X.
0.3437.20.89Zm.12716.1.S1_atAY112283.1--4e-1At3g43583unknown proteinO.I.H.G.S.X.
0.3336.00.75Zm.13152.1.A1_atCA405064alpha-1,4-glucan phosphorylase L isozyme-1e-31At3g29320glucan phosphorylase, putativeO.I.H.G.S.X.
0.3336.00.82Zm.15056.1.A1_atCD441393hypothetical protein LOC100193421-1e-1At2g45270glycoprotease M22 family proteinO.I.H.G.S.X.
0.3336.00.87Zm.12715.1.A1_atAY106906.1--7e-1At3g21860ASK10 (ARABIDOPSIS SKP1-LIKE 10)O.I.H.G.S.X.
0.3233.40.84Zm.13887.1.A1_atAF099411.1R2R3MYB-domain protein-9e-1At5g01200myb family transcription factorO.I.H.G.S.X.
0.3131.60.80Zm.13635.1.S1_atAY107316.1--4e+0At3g52070unknown proteinO.I.H.G.S.X.
0.2724.60.86Zm.12367.1.S1_atBQ577550--3e+0At2g14095unknown proteinO.I.H.G.S.X.
0.2622.70.81Zm.14039.1.A2_a_atCF003126plasminogen activator inhibitor 1 RNA-binding protein-4e-3At4g16830nuclear RNA-binding protein (RGGA)O.I.H.G.S.X.
0.2622.70.81Zm.5961.1.S1_atAI665954--3e+0At2g24970unknown proteinO.I.H.G.S.X.
0.2521.30.82Zm.6207.1.A1_atBM07511140S ribosomal protein S17-4-2e-35At4g1739060S ribosomal protein L15 (RPL15B)O.I.H.G.S.X.
0.2521.30.86Zm.6127.1.A1_a_atAY110233.126S proteasome non-ATPase regulatory subunit 10-1e-9At2g03430ankyrin repeat family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.599.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.799.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.499.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.698.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.098.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.898.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.498.7GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM162264Mutant 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage